RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TATDN2Q93075 761 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 PAWRQ96IZ0 340 aaKnown RBP14.74□□□□□ -0.05
CCDC40-209ENST00000573474 CHP1Q99653 195 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 PI4K2AQ9BTU6 479 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 IFIH1Q9BYX4 1025 aaKnown RBP14.74□□□□□ -0.05
CCDC40-209ENST00000573474 IMPG2Q9BZV3 1241 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.74□□□□□ -0.05
CCDC40-209ENST00000573474 C1orf112Q9NSG2 853 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 DPP3Q9NY33 737 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 ITGA11Q9UKX5 1188 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 A0A0U1RQF3 1178 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 SMIM28A0A1B0GU29 152 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 F8VZ95 297 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 XPOTO43592 962 aaKnown RBP14.73□□□□□ -0.05
CCDC40-209ENST00000573474 ASS1P00966 412 aaKnown RBP14.73□□□□□ -0.05
CCDC40-209ENST00000573474 SERPING1P05155 500 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 CCDC172P0C7W6 258 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 FERP16591 822 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 MSNP26038 577 aaKnown RBP14.73□□□□□ -0.05
CCDC40-209ENST00000573474 ATICP31939 592 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 SOX5P35711 763 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 MYL6P60660 151 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 RBP5P82980 135 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 GCNT1Q02742 428 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 ZBTB6Q15916 424 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 ARHGAP44Q17R89 818 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 E4F1Q66K89 784 aaPredicted RBP14.73□□□□□ -0.05
CCDC40-209ENST00000573474 C1orf127Q8N9H9 656 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 BEST2Q8NFU1 509 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 KIAA1524Q8TCG1 905 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 PGBD4Q96DM1 585 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 ZMAT2Q96NC0 199 aaKnown RBP14.73□□□□□ -0.05
CCDC40-209ENST00000573474 FTHL17Q9BXU8 183 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 HIPK3Q9H422 1215 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 RGS18Q9NS28 235 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 KLK14Q9P0G3 267 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 SIX4Q9UIU6 781 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 ATP11BQ9Y2G3 1177 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 GIT1Q9Y2X7 761 aa14.73□□□□□ -0.05
CCDC40-209ENST00000573474 R3HCC1Q9Y3T6 440 aaKnown RBP14.73□□□□□ -0.05
CCDC40-209ENST00000573474 BZW2Q9Y6E2 419 aaKnown RBP14.73□□□□□ -0.05
CCDC40-209ENST00000573474 SOWAHDA6NJG2 315 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 ESPNB1AK53 854 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 FOXN3O00409 490 aaPredicted RBP14.72□□□□□ -0.05
CCDC40-209ENST00000573474 NBNO60934 754 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 ITGB3P05106 788 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 KRT19P08727 400 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 TBXAS1P24557 533 aaPredicted RBP14.72□□□□□ -0.05
CCDC40-209ENST00000573474 NOP14P78316 857 aaKnown RBP14.72□□□□□ -0.05
CCDC40-209ENST00000573474 SMYD5Q6GMV2 418 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 IRF2BP2Q7Z5L9 587 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 CCDC170Q8IYT3 715 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 CXorf38Q8TB03 319 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 KAT5Q92993 513 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 JAKMIP2Q96AA8 810 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 KREMEN1Q96MU8 473 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 GPR88Q9GZN0 384 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 CXCL16Q9H2A7 254 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 NHEJ1Q9H9Q4 299 aaPredicted RBP14.72□□□□□ -0.05
CCDC40-209ENST00000573474 APOBEC3GQ9HC16 384 aaKnown RBP14.72□□□□□ -0.05
CCDC40-209ENST00000573474 UBN1Q9NPG3 1134 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 UBQLN1Q9UMX0 589 aaKnown RBP14.72□□□□□ -0.05
CCDC40-209ENST00000573474 NUB1Q9Y5A7 615 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 ANK1P16157 1881 aa14.72□□□□□ -0.05
CCDC40-209ENST00000573474 SSU72P8A0A1W2PR75 194 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 GFPT2O94808 682 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 CYP3A5P20815 502 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 CYLC1P35663 651 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-209ENST00000573474 PRKCIP41743 596 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 FAM189BP81408 668 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 ARID5AQ03989 594 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 KLHL30Q0D2K2 578 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 MAPK8IP2Q13387 824 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-209ENST00000573474 CUL2Q13617 745 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 GPNMBQ14956 572 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 LRRC26Q2I0M4 334 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 ZNF699Q32M78 642 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 PLEKHG4Q58EX7 1191 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 HGSNATQ68CP4 663 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 SCARA3Q6AZY7 606 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 SPOPLQ6IQ16 392 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 RAD9BQ6WBX8 426 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 RTN4RL1Q86UN2 441 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-209ENST00000573474 ECHDC2Q86YB7 292 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 SHC3Q92529 594 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 SEPT8Q92599 483 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 APBB2Q92870 758 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 FAXDC2Q96IV6 333 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 CCDC42Q96M95 316 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 XYLT2Q9H1B5 865 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 TSPYL2Q9H2G4 693 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-209ENST00000573474 VRTNQ9H8Y1 702 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 TMEM39AQ9NV64 488 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 ARHGAP20Q9P2F6 1191 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 TBX21Q9UL17 535 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 AGAP1Q9UPQ3 857 aa14.71□□□□□ -0.05
CCDC40-209ENST00000573474 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-209ENST00000573474 UMODL1Q5DID0 1318 aa14.7□□□□□ -0.06
CCDC40-209ENST00000573474 DNAH12Q6ZR08 3092 aa14.7□□□□□ -0.06
CCDC40-209ENST00000573474 C9IYK1 514 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms