RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 C16orf54Q6UWD8 224 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 FGD2Q7Z6J4 655 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 NAXEQ8NCW5 288 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 PARD3BQ8TEW8 1205 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 DPF3Q92784 378 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 PPM1MQ96MI6 270 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 NUP88Q99567 741 aaPredicted RBP6.98□□□□□ -1.29
VPS53-212ENST00000572259 MRIQ9BWK5 157 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 GLIS2Q9BZE0 524 aaPredicted RBP6.98□□□□□ -1.29
VPS53-212ENST00000572259 GPR108Q9NPR9 543 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 GGA3Q9NZ52 723 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS53-212ENST00000572259 OAS3Q9Y6K5 1087 aaKnown RBP6.98□□□□□ -1.29
VPS53-212ENST00000572259 ADAMTSL1Q8N6G6 1762 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 A0A1B0GUL7 405 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 NOTOA8MTQ0 251 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 B4E1Z4 1266 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 FAM47E-STBD1D6RA91 191 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 H7BY64 318 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 BIN1O00499 593 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 NEMP1O14524 444 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 PPP1R11O60927 126 aaPredicted RBP6.97□□□□□ -1.29
VPS53-212ENST00000572259 SOD2P04179 222 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 ASGR2P07307 311 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 UQCRFS1P1P0C7P4 283 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 SRGAP2CP0DJJ0 459 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 GRK2P25098 689 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 GRK3P35626 688 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 IGFALSP35858 605 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 MVKQ03426 396 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 TFCP2Q12800 502 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 TAF11Q15544 211 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 CFAP100Q494V2 611 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 TIGD5Q53EQ6 642 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 CEP85Q6P2H3 762 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 UBE2R2Q712K3 238 aaPredicted RBP6.97□□□□□ -1.29
VPS53-212ENST00000572259 SAPCD2Q86UD0 394 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 CABP7Q86V35 215 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 DNAJC5GQ8N7S2 189 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 OR2W6PQ8NHA6 318 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 TEKT1Q969V4 418 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 SCLYQ96I15 445 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 KIRREL1Q96J84 757 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 MXD3Q9BW11 206 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 KRTAP4-7Q9BYR0 210 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 ANLNQ9NQW6 1124 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 C1orf112Q9NSG2 853 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 ZBTB40Q9NUA8 1239 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 TRMT13Q9NUP7 481 aaKnown RBP6.97□□□□□ -1.29
VPS53-212ENST00000572259 TMOD2Q9NZR1 351 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 DDX20Q9UHI6 824 aaKnown RBP6.97□□□□□ -1.29
VPS53-212ENST00000572259 SAP30BPQ9UHR5 308 aaKnown RBP6.97□□□□□ -1.29
VPS53-212ENST00000572259 JAG2Q9Y219 1238 aa6.97□□□□□ -1.29
VPS53-212ENST00000572259 TNPO3Q9Y5L0 923 aaKnown RBP6.97□□□□□ -1.29
VPS53-212ENST00000572259 TCRBV16S1A1N1A0A5B0 115 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 FAM170AA1A519 330 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 K7ENM7 598 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 TRAF5O00463 557 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 GSTA4O15217 222 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 KPNA6O60684 536 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 PYGMP11217 842 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 HSD3B1P14060 373 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 PNLIPP16233 465 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 ZKSCAN1P17029 563 aaPredicted RBP6.96□□□□□ -1.3
VPS53-212ENST00000572259 FPR2P25090 351 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 FKBP1BP68106 108 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 KIR3DS1Q14943 382 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 SUPT20HL1Q3ZLR7 823 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 TTC39AQ5SRH9 613 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 HHIPL2Q6UWX4 724 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 C1orf122Q6ZSJ8 110 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 DDX53Q86TM3 631 aaKnown RBP6.96□□□□□ -1.3
VPS53-212ENST00000572259 NLRX1Q86UT6 975 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 FAM43AQ8N2R8 423 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 Q8N3U1 123 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 CERS5Q8N5B7 392 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 KIAA1958Q8N8K9 716 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 CCT6BQ92526 530 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 FUBP3Q96I24 572 aaKnown RBP eCLIP6.96□□□□□ -1.3
VPS53-212ENST00000572259 KCNJ15Q99712 375 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 SP110Q9HB58 689 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 GBA2Q9HCG7 927 aaPredicted RBP6.96□□□□□ -1.3
VPS53-212ENST00000572259 KIAA1586Q9HCI6 787 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 CRTAC1Q9NQ79 661 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 FBXL7Q9UJT9 491 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 ACAD8Q9UKU7 415 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 ECM29Q5VYK3 1845 aa6.96□□□□□ -1.3
VPS53-212ENST00000572259 MYH2Q9UKX2 1941 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 ARVCFO00192 962 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 TLR5O60602 858 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 DGKIO75912 1065 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 LTFP02788 710 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 MSL3P1P0C860 447 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 MYBL2P10244 700 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 TGFB3P10600 412 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 GRK6P43250 576 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 PHKA1P46020 1223 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 GALK1P51570 392 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 ALDH5A1P51649 535 aaPredicted RBP6.95□□□□□ -1.3
VPS53-212ENST00000572259 HUNKP57058 714 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms