RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 RTFDC1Q9BY42 306 aaPredicted RBP16.2■□□□□ 0.18
CIITA-204ENST00000570546 ZNF70Q9UC06 446 aaPredicted RBP16.2■□□□□ 0.18
CIITA-204ENST00000570546 STAP1Q9ULZ2 295 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 INPP5FQ9Y2H2 1132 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 PMLP29590 882 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 CHRNA5P30532 468 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 CASP4P49662 377 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 SMAD1Q15797 465 aaKnown RBP16.2■□□□□ 0.18
CIITA-204ENST00000570546 WDR72Q3MJ13 1102 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 RFX8Q6ZV50 586 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 ZNF677Q86XU0 584 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 PI4K2AQ9BTU6 479 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 FAM129AQ9BZQ8 928 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 PABPC3Q9H361 631 aaKnown RBP16.2■□□□□ 0.18
CIITA-204ENST00000570546 PPCSQ9HAB8 311 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 KCNH7Q9NS40 1196 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 GTSE1Q9NYZ3 720 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 FNTAP49354 379 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 HMGCS2P54868 508 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 VPS72Q15906 364 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 ABI1Q8IZP0 508 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 MYCBPAPQ8TBZ2 947 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 SCFD1Q8WVM8 642 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 SUDS3Q9H7L9 328 aaPredicted RBP16.19■□□□□ 0.18
CIITA-204ENST00000570546 PNMA3Q9UL41 463 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 FOXN3O00409 490 aaPredicted RBP16.19■□□□□ 0.18
CIITA-204ENST00000570546 SASH3O75995 380 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 DEUP1Q05D60 604 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 EPC2Q52LR7 807 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 ZNF571Q7Z3V5 609 aaPredicted RBP16.19■□□□□ 0.18
CIITA-204ENST00000570546 FSD1LQ9BXM9 530 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 MOV10L1Q9BXT6 1211 aaKnown RBP16.19■□□□□ 0.18
CIITA-204ENST00000570546 ATF5Q9Y2D1 282 aaPredicted RBP16.19■□□□□ 0.18
CIITA-204ENST00000570546 FNDC3AQ9Y2H6 1198 aaKnown RBP16.19■□□□□ 0.18
CIITA-204ENST00000570546 HSPA8P11142 646 aaKnown RBP16.19■□□□□ 0.18
CIITA-204ENST00000570546 HNRNPH1P31943 449 aaKnown RBP16.19■□□□□ 0.18
CIITA-204ENST00000570546 PGM1P36871 562 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 C3orf20Q8ND61 904 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 A8MXQ7 604 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 PIK3R2O00459 728 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 ARPP19P56211 112 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 SGSM1Q2NKQ1 1148 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 EFHC2Q5JST6 749 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 SLC10A5Q5PT55 438 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 ACAD10Q6JQN1 1059 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 APOBEC3FQ8IUX4 373 aaKnown RBP16.19■□□□□ 0.18
CIITA-204ENST00000570546 TRIML2Q8N7C3 387 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 KIF12Q96FN5 646 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 WDR35Q9P2L0 1181 aa16.19■□□□□ 0.18
CIITA-204ENST00000570546 EXTL3O43909 919 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 SGPL1O95470 568 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 CHEK2O96017 543 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 KRT10P13645 584 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 TYK2P29597 1187 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 RAPGEF5Q92565 580 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 ERP27Q96DN0 273 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 ARHGEF26Q96DR7 871 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 CYP4F11Q9HBI6 524 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 SLC24A3Q9HC58 644 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 UBN1Q9NPG3 1134 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 GTF3C4Q9UKN8 822 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 H3BRJ5 948 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 NR3C2P08235 984 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 PRKCEQ02156 737 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 NME3Q13232 169 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 KIF22Q14807 665 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 RIBC1Q8N443 379 aaPredicted RBP16.18■□□□□ 0.18
CIITA-204ENST00000570546 ALKBH8Q96BT7 664 aaKnown RBP16.18■□□□□ 0.18
CIITA-204ENST00000570546 BTBD6Q96KE9 485 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 SERPINB12Q96P63 405 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 IL17RBQ9NRM6 502 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 FAM237AA0A1B0GTK4 181 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 GLI1P08151 1106 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 RALAP11233 206 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 MMP19Q99542 508 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 TSPYL2Q9H2G4 693 aaPredicted RBP16.18■□□□□ 0.18
CIITA-204ENST00000570546 ORC6Q9Y5N6 252 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 PAPOLAP51003 745 aaKnown RBP16.18■□□□□ 0.18
CIITA-204ENST00000570546 ALDH18A1P54886 795 aaKnown RBP16.18■□□□□ 0.18
CIITA-204ENST00000570546 KYAT1Q16773 422 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 LRRC34Q8IZ02 419 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 CCNYL1Q8N7R7 359 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 SCG3Q8WXD2 468 aaKnown RBP16.18■□□□□ 0.18
CIITA-204ENST00000570546 AGBL1Q96MI9 1066 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 BFARQ9NZS9 450 aa16.18■□□□□ 0.18
CIITA-204ENST00000570546 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.18■□□□□ 0.18
CIITA-204ENST00000570546 A0A0A6YYK5 440 aaPredicted RBP16.17■□□□□ 0.18
CIITA-204ENST00000570546 ENO1P06733 434 aaKnown RBP16.17■□□□□ 0.18
CIITA-204ENST00000570546 MYL3P08590 195 aa16.17■□□□□ 0.18
CIITA-204ENST00000570546 CAPRIN2Q6IMN6 1127 aaKnown RBP16.17■□□□□ 0.18
CIITA-204ENST00000570546 DUSP9Q99956 384 aaKnown RBP16.17■□□□□ 0.18
CIITA-204ENST00000570546 RIOX1Q9H6W3 641 aa16.17■□□□□ 0.18
CIITA-204ENST00000570546 TBX20Q9UMR3 447 aa16.17■□□□□ 0.18
CIITA-204ENST00000570546 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.17■□□□□ 0.18
CIITA-204ENST00000570546 SPATA31A5Q5VU36 1347 aa16.17■□□□□ 0.18
CIITA-204ENST00000570546 SPATA31A7Q8IWB4 1347 aa16.17■□□□□ 0.18
CIITA-204ENST00000570546 IGSF9BQ9UPX0 1349 aa16.17■□□□□ 0.18
CIITA-204ENST00000570546 YWHAHQ04917 246 aaPredicted RBP16.17■□□□□ 0.18
CIITA-204ENST00000570546 KIF2BQ8N4N8 673 aa16.17■□□□□ 0.18
CIITA-204ENST00000570546 EPS8L3Q8TE67 593 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms