RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ACAP3Q96P50 834 aa16.35■□□□□ 0.21
CLN3-236ENST00000568558 KXD1Q9BQD3 176 aa16.35■□□□□ 0.21
CLN3-236ENST00000568558 CNTN3Q9P232 1028 aa16.35■□□□□ 0.21
CLN3-236ENST00000568558 COL4A2P08572 1712 aa16.35■□□□□ 0.21
CLN3-236ENST00000568558 DCHS1Q96JQ0 3298 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 ARHGEF37A1IGU5 675 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 WDR27A2RRH5 827 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 SYN3O14994 580 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 SLC16A4O15374 487 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 MEFVO15553 781 aaPredicted RBP16.34■□□□□ 0.21
CLN3-236ENST00000568558 ABLIM3O94929 683 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 GLULP15104 373 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 GUCY2CP25092 1073 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 SNW1Q13573 536 aaKnown RBP16.34■□□□□ 0.21
CLN3-236ENST00000568558 MLF2Q15773 248 aaPredicted RBP16.34■□□□□ 0.21
CLN3-236ENST00000568558 SLC5A9Q2M3M2 681 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 ZNF461Q8TAF7 563 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 ING5Q8WYH8 240 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 NTPCRQ9BSD7 190 aaKnown RBP16.34■□□□□ 0.21
CLN3-236ENST00000568558 TCHPQ9BT92 498 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 DDX23Q9BUQ8 820 aaKnown RBP16.34■□□□□ 0.21
CLN3-236ENST00000568558 TIPINQ9BVW5 301 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 SEMA4AQ9H3S1 761 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 AVENQ9NQS1 362 aaPredicted RBP16.34■□□□□ 0.21
CLN3-236ENST00000568558 MRPS23Q9Y3D9 190 aaKnown RBP16.34■□□□□ 0.21
CLN3-236ENST00000568558 R4GN57 208 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 TICRRQ7Z2Z1 1910 aa16.34■□□□□ 0.21
CLN3-236ENST00000568558 KANSL1LA0AUZ9 987 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 SFI1A8K8P3 1242 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 TBC1D4O60343 1298 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 LRRN2O75325 713 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 LRG1P02750 347 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 RHOP08100 348 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 HARSP12081 509 aaKnown RBP16.33■□□□□ 0.2
CLN3-236ENST00000568558 RPL9P32969 192 aaKnown RBP16.33■□□□□ 0.2
CLN3-236ENST00000568558 PRKCQQ04759 706 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 HYIQ5T013 277 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 C1orf210Q8IVY1 113 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 SPIRE2Q8WWL2 714 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 C18orf25Q96B23 403 aaPredicted RBP16.33■□□□□ 0.2
CLN3-236ENST00000568558 ZBTB45Q96K62 511 aaPredicted RBP16.33■□□□□ 0.2
CLN3-236ENST00000568558 PNMA5Q96PV4 448 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 NUB1Q9Y5A7 615 aa16.33■□□□□ 0.2
CLN3-236ENST00000568558 EP300Q09472 2414 aaPredicted RBP16.33■□□□□ 0.2
CLN3-236ENST00000568558 ECI2O75521 394 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 LMNAP02545 664 aaKnown RBP16.32■□□□□ 0.2
CLN3-236ENST00000568558 SP9P0CG40 484 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 ATF2P15336 505 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 PTPN2P17706 415 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 ELF1P32519 619 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 ATP2C1P98194 919 aaPredicted RBP16.32■□□□□ 0.2
CLN3-236ENST00000568558 PFKPQ01813 784 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 RAD51AP2Q09MP3 1159 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 MRPL58Q14197 206 aaKnown RBP16.32■□□□□ 0.2
CLN3-236ENST00000568558 NOLC1Q14978 699 aaKnown RBP eCLIP16.32■□□□□ 0.2
CLN3-236ENST00000568558 ZRSR1Q15695 479 aaKnown RBP16.32■□□□□ 0.2
CLN3-236ENST00000568558 SLC44A4Q53GD3 710 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 RILPL1Q5EBL4 403 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 POTEHQ6S545 545 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 TCEAL8Q8IYN2 117 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 TMEM161BQ8NDZ6 487 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 MCRS1Q96EZ8 462 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 GDE1Q9NZC3 331 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 ANKFY1Q9P2R3 1169 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 KIF3AQ9Y496 699 aa16.32■□□□□ 0.2
CLN3-236ENST00000568558 TSC2P49815 1807 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 H7C4K7 107 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 PRRG1O14668 218 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 TOM1L1O75674 476 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 SEC24AO95486 1093 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 PLS3P13797 630 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 CEBPBP17676 345 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 ARPP19P56211 112 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 STRN3Q13033 797 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 SLC10A6Q3KNW5 377 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 SEZ6Q53EL9 994 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 PRSS36Q5K4E3 855 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 ZC3H14Q6PJT7 736 aaKnown RBP16.31■□□□□ 0.2
CLN3-236ENST00000568558 ZPBP2Q6X784 338 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 KCTD17Q8N5Z5 321 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 SYT2Q8N9I0 419 aaPredicted RBP16.31■□□□□ 0.2
CLN3-236ENST00000568558 KCNG4Q8TDN1 519 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 SUSD3Q96L08 255 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 OSBPL6Q9BZF3 934 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 PLA2G2FQ9BZM2 168 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 CYP4F11Q9HBI6 524 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 KCNG1Q9UIX4 513 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 FBXL5Q9UKA1 691 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 OTOGLQ3ZCN5 2332 aa16.31■□□□□ 0.2
CLN3-236ENST00000568558 TCHHQ07283 1943 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 MAPTP10636 758 aaKnown RBP16.3■□□□□ 0.2
CLN3-236ENST00000568558 MCM4P33991 863 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 SMTNP53814 917 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 SLC12A3P55017 1021 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 UBXN2BQ14CS0 331 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 TPGS2Q68CL5 300 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 MCTP1Q6DN14 999 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 ZNF280DQ6N043 979 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 MAML2Q8IZL2 1156 aaPredicted RBP16.3■□□□□ 0.2
CLN3-236ENST00000568558 DDX12PQ92771 950 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms