RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 HSPBP1Q9NZL4 362 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 BARX2Q9UMQ3 279 aaPredicted RBP10.72□□□□□ -0.69
CLN3-220ENST00000566040 PCDHB13Q9Y5F0 798 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 GRXCR2A6NFK2 248 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 PODXLO00592 558 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 CLIC2O15247 247 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 PAPLNO95428 1278 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 VNN2O95498 520 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 ALDH2P05091 517 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 CNPP09543 421 aaKnown RBP10.71□□□□□ -0.69
CLN3-220ENST00000566040 BMP1P13497 986 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 FGFR3P22607 806 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 TKTP29401 623 aaKnown RBP10.71□□□□□ -0.69
CLN3-220ENST00000566040 ABCD1P33897 745 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 CASP4P49662 377 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 MCCD1P59942 119 aaPredicted RBP10.71□□□□□ -0.69
CLN3-220ENST00000566040 KANK3Q6NY19 840 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 SYCE2Q6PIF2 218 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 TMEM184AQ6ZMB5 413 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 RBM23Q86U06 439 aaKnown RBP10.71□□□□□ -0.69
CLN3-220ENST00000566040 ELOA2Q8IYF1 753 aaPredicted RBP10.71□□□□□ -0.69
CLN3-220ENST00000566040 PATJQ8NI35 1801 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 LNX1Q8TBB1 728 aaPredicted RBP10.71□□□□□ -0.69
CLN3-220ENST00000566040 DDX27Q96GQ7 796 aaKnown RBP10.71□□□□□ -0.69
CLN3-220ENST00000566040 KLHL5Q96PQ7 755 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 MED15Q96RN5 788 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 FAM213AQ9BRX8 229 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 ENTPD7Q9NQZ7 604 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 TOPORSQ9NS56 1045 aaPredicted RBP10.71□□□□□ -0.69
CLN3-220ENST00000566040 THEGQ9P2T0 379 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 SIX4Q9UIU6 781 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 PCDHA5Q9Y5H7 936 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 HCFC2Q9Y5Z7 792 aa10.71□□□□□ -0.69
CLN3-220ENST00000566040 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 H3BQ06 376 aaPredicted RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 PIRO00625 290 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 TEX28O15482 410 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 EXTL3O43909 919 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 EPCAMP16422 314 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 RPL17P18621 184 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 CYP3A5P20815 502 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 PMS1P54277 932 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 YARSP54577 528 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 POU5F1Q01860 360 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 PPP2R3AQ06190 1150 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 MRPL58Q14197 206 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 SMC1AQ14683 1233 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 KNOP1Q1ED39 458 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 C9orf57Q5W0N0 161 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 LMBRD2Q68DH5 695 aaPredicted RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 SLFN12LQ6IEE8 588 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 PDE12Q6L8Q7 609 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 LILRA6Q6PI73 481 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 TMC7Q7Z402 723 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 ZC3H3Q8IXZ2 948 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 GPD1LQ8N335 351 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 C1orf127Q8N9H9 656 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 OR5B17Q8NGF7 314 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 PIK3R5Q8WYR1 880 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 ZNF516Q92618 1163 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 KIF12Q96FN5 646 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 FAM193BQ96PV7 902 aaPredicted RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 CLSTN3Q9BQT9 956 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 S1PR5Q9H228 398 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 TMEM206Q9H813 350 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 RPF1Q9H9Y2 349 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 PDE11AQ9HCR9 933 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 NGRNQ9NPE2 291 aaKnown RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 EXOC1Q9NV70 894 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 MAN1B1Q9UKM7 699 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 MAPK8IP1Q9UQF2 711 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 C2CD2Q9Y426 696 aa10.7□□□□□ -0.7
CLN3-220ENST00000566040 KIF26AQ9ULI4 1882 aaPredicted RBP10.7□□□□□ -0.7
CLN3-220ENST00000566040 SF3B1O75533 1304 aaKnown RBP eCLIP10.69□□□□□ -0.7
CLN3-220ENST00000566040 ZNF638Q14966 1978 aaKnown RBP10.69□□□□□ -0.7
CLN3-220ENST00000566040 M0QZQ0 153 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 CXCL14O95715 111 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 KCNA5P22460 613 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 MATR3P43243 847 aaKnown RBP eCLIP10.69□□□□□ -0.7
CLN3-220ENST00000566040 GLUD2P49448 558 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 CLCN4P51793 760 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 UBE2HP62256 183 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 KRT17Q04695 432 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 PSMD2Q13200 908 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 KYAT1Q16773 422 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 LEXMQ3ZCV2 418 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 COBLL1Q53SF7 1204 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 FAM171A1Q5VUB5 890 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 ARMCX5Q6P1M9 558 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 DCLRE1AQ6PJP8 1040 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 APBB1IPQ7Z5R6 666 aaPredicted RBP10.69□□□□□ -0.7
CLN3-220ENST00000566040 SLC9A9Q8IVB4 645 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 GUF1Q8N442 669 aaKnown RBP10.69□□□□□ -0.7
CLN3-220ENST00000566040 SMRP1Q8NCR6 262 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 GPT2Q8TD30 523 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 SUSD3Q96L08 255 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 MFSD14AQ96MC6 490 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 UROC1Q96N76 676 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 RTP3Q9BQQ7 232 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 COLEC11Q9BWP8 271 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms