RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ART4Q93070 314 aa14.38□□□□□ -0.11
CLK3-215ENST00000564353 APOBEC3GQ9HC16 384 aaKnown RBP14.38□□□□□ -0.11
CLK3-215ENST00000564353 SLC40A1Q9NP59 571 aa14.38□□□□□ -0.11
CLK3-215ENST00000564353 SYNPO2Q9UMS6 1093 aa14.38□□□□□ -0.11
CLK3-215ENST00000564353 PCDHB4Q9Y5E5 795 aa14.38□□□□□ -0.11
CLK3-215ENST00000564353 KIF13BQ9NQT8 1826 aa14.38□□□□□ -0.11
CLK3-215ENST00000564353 TNS1Q9HBL0 1735 aaKnown RBP14.38□□□□□ -0.11
CLK3-215ENST00000564353 ZNF541Q9H0D2 1346 aa14.38□□□□□ -0.11
CLK3-215ENST00000564353 TBC1D12O60347 775 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 ZBTB7AO95365 584 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 NUDT17P0C025 328 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 JAK3P52333 1124 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 KRT76Q01546 638 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 ALCAMQ13740 583 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 FAM83AQ86UY5 434 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 EXOC3L1Q86VI1 746 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 C12orf56Q8IXR9 622 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 CYP4X1Q8N118 509 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 OR5B17Q8NGF7 314 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 ZBTB10Q96DT7 871 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 SCLT1Q96NL6 688 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 PAIP2Q9BPZ3 127 aaKnown RBP14.37□□□□□ -0.11
CLK3-215ENST00000564353 DEFB129Q9H1M3 183 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 PLA2G6O60733 806 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 CETPP11597 493 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 ATF7P17544 494 aaPredicted RBP14.37□□□□□ -0.11
CLK3-215ENST00000564353 POLGP54098 1239 aaPredicted RBP14.37□□□□□ -0.11
CLK3-215ENST00000564353 ACTR2P61160 394 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 OSTNP61366 133 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 RPL7AP62424 266 aaKnown RBP14.37□□□□□ -0.11
CLK3-215ENST00000564353 DRP2Q13474 957 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 ANKRD20A8PQ5CZ79 823 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 GSTA5Q7RTV2 222 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 CEP120Q8N960 986 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 WRNIP1Q96S55 665 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 JPH1Q9HDC5 661 aaPredicted RBP14.37□□□□□ -0.11
CLK3-215ENST00000564353 FSBPO95073 299 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 CNTN2Q02246 1040 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 CIAPIN1Q6FI81 312 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 SCARA5Q6ZMJ2 495 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 VSIG10LQ86VR7 867 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 FMNL3Q8IVF7 1028 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 ASAP3Q8TDY4 903 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 ARHGEF2Q92974 986 aaKnown RBP14.37□□□□□ -0.11
CLK3-215ENST00000564353 HVCN1Q96D96 273 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 CYP26B1Q9NR63 512 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 FGFR1OP2Q9NVK5 253 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 FBXO40Q9UH90 709 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 HACL1Q9UJ83 578 aa14.37□□□□□ -0.11
CLK3-215ENST00000564353 ATP8B3O60423 1300 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 MYPNQ86TC9 1320 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 GSTTP1A0A1W2PQM5 241 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 THAP12O43422 761 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 KCNA2P16389 499 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 MARK3P27448 753 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 MMP13P45452 471 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 SCTRP47872 440 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 HADHBP55084 474 aaKnown RBP14.36□□□□□ -0.11
CLK3-215ENST00000564353 ORC1Q13415 861 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 NBPF20Q3BBV1 942 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 BRDTQ58F21 947 aaPredicted RBP14.36□□□□□ -0.11
CLK3-215ENST00000564353 WDR44Q5JSH3 913 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 MFSD14AQ96MC6 490 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 IWS1Q96ST2 819 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 KIAA1683Q9H0B3 1180 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 TAOK3Q9H2K8 898 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 TMEM120BA0PK00 339 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 VNN1O95497 513 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 UNGP13051 313 aaPredicted RBP14.36□□□□□ -0.11
CLK3-215ENST00000564353 RARGP13631 454 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 CCND2P30279 289 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 TNFSF9P41273 254 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 TMEM132BQ14DG7 1078 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 CEP57Q86XR8 500 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 MICALL2Q8IY33 904 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 IFT74Q96LB3 600 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 ZNF317Q96PQ6 595 aaPredicted RBP14.36□□□□□ -0.11
CLK3-215ENST00000564353 ABCF3Q9NUQ8 709 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 ADAM22Q9P0K1 906 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 UVRAGQ9P2Y5 699 aa14.36□□□□□ -0.11
CLK3-215ENST00000564353 SAE1Q9UBE0 346 aaPredicted RBP14.36□□□□□ -0.11
CLK3-215ENST00000564353 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.36□□□□□ -0.11
CLK3-215ENST00000564353 TCP11X1B4DZS4 312 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 GOLGA8SH3BPF8 625 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 GOLGA8MH3BSY2 632 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 BANF1O75531 89 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 LYPLA2O95372 231 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 MPP2Q14168 576 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 E2F5Q15329 346 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 PPP2R5EQ16537 467 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 TXNRD3NBQ6F5E7 133 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 SRRM1Q8IYB3 904 aaKnown RBP14.35□□□□□ -0.11
CLK3-215ENST00000564353 JDP2Q8WYK2 163 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 LPAR1Q92633 364 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 KLC4Q9NSK0 619 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 ANKEF1Q9NU02 776 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 RBAKQ9NYW8 714 aaPredicted RBP14.35□□□□□ -0.11
CLK3-215ENST00000564353 SLC9A2Q9UBY0 812 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 AGO2Q9UKV8 859 aaKnown RBP14.35□□□□□ -0.11
CLK3-215ENST00000564353 STBD1O95210 358 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms