RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 HMGB1P09429 215 aaKnown RBP11.48□□□□□ -0.57
SF3B3-204ENST00000563739 PTGDRQ13258 359 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 MXD4Q14582 209 aaPredicted RBP11.48□□□□□ -0.57
SF3B3-204ENST00000563739 FAM187BQ17R55 369 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 UVSSAQ2YD98 709 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 SLC8B1Q6J4K2 584 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 PKN3Q6P5Z2 889 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 HS6ST3Q8IZP7 471 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 CELF5Q8N6W0 485 aaKnown RBP11.48□□□□□ -0.57
SF3B3-204ENST00000563739 C22orf23Q9BZE7 217 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 ZSWIM4Q9H7M6 989 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 BACE2Q9Y5Z0 518 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 DENND4CQ5VZ89 1909 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 ANK1P16157 1881 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 NR1I2O75469 434 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 VIPR2P41587 438 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 SOX9P48436 509 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 CLCNKBP51801 687 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 SF3A2Q15428 464 aaKnown RBP11.47□□□□□ -0.57
SF3B3-204ENST00000563739 GLRA4Q5JXX5 417 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 BLOC1S2Q6QNY1 142 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 PRR23BQ6ZRT6 265 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 KRT25Q7Z3Z0 450 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 NEK8Q86SG6 692 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 NOSTRINQ8IVI9 506 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 FAM160A2Q8N612 972 aaPredicted RBP11.47□□□□□ -0.57
SF3B3-204ENST00000563739 CEP120Q8N960 986 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 SECISBP2LQ93073 1101 aaKnown RBP11.47□□□□□ -0.57
SF3B3-204ENST00000563739 CHFRQ96EP1 664 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 LRRC3BQ96PB8 259 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 EIF2AK1Q9BQI3 630 aaKnown RBP11.47□□□□□ -0.57
SF3B3-204ENST00000563739 LARP6Q9BRS8 491 aaKnown RBP11.47□□□□□ -0.57
SF3B3-204ENST00000563739 MKNK1Q9BUB5 465 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 LRRC3Q9BY71 257 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 TRIM6Q9C030 488 aaPredicted RBP11.47□□□□□ -0.57
SF3B3-204ENST00000563739 LMAN1LQ9HAT1 526 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 TRPV5Q9NQA5 729 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 CEP72Q9P209 647 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 PIAS3Q9Y6X2 628 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 LOC400499M0QZD8 3231 aa11.47□□□□□ -0.57
SF3B3-204ENST00000563739 USO1O60763 962 aaKnown RBP11.46□□□□□ -0.57
SF3B3-204ENST00000563739 DGAT1O75907 488 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 DEXIO95424 95 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 THP07101 528 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 SPATA31C1P0DKV0 1188 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 GJA1P17302 382 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 CCR3P51677 355 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 LIMK1P53667 647 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 EPHA5P54756 1037 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 AKAP17AQ02040 695 aaKnown RBP11.46□□□□□ -0.57
SF3B3-204ENST00000563739 TFDP1Q14186 410 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 MRPL58Q14197 206 aaKnown RBP11.46□□□□□ -0.57
SF3B3-204ENST00000563739 CCDC6Q16204 474 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 UPP1Q16831 310 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 EXOC8Q8IYI6 725 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 PIGOQ8TEQ8 1089 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 FAM3CQ92520 227 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 PRIMPOLQ96LW4 560 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 IER2Q9BTL4 223 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 TRPV4Q9HBA0 871 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 ANKEF1Q9NU02 776 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 ANGPTL2Q9UKU9 493 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 INSL5Q9Y5Q6 135 aa11.46□□□□□ -0.57
SF3B3-204ENST00000563739 FREM2Q5SZK8 3169 aa11.46□□□□□ -0.58
SF3B3-204ENST00000563739 ATG2BQ96BY7 2078 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 NCAM2O15394 837 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 DKC1O60832 514 aaKnown RBP eCLIP11.45□□□□□ -0.58
SF3B3-204ENST00000563739 PRKCBP05771 671 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 GCFC2P16383 781 aaKnown RBP11.45□□□□□ -0.58
SF3B3-204ENST00000563739 CCNE1P24864 410 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 GDI1P31150 447 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 RBM25P49756 843 aaKnown RBP11.45□□□□□ -0.58
SF3B3-204ENST00000563739 ELAVL2Q12926 359 aaKnown RBP11.45□□□□□ -0.58
SF3B3-204ENST00000563739 SIM2Q14190 667 aaPredicted RBP11.45□□□□□ -0.58
SF3B3-204ENST00000563739 XKR4Q5GH76 650 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 NT5DC1Q5TFE4 455 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 RTL10Q7L3V2 364 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 TMC8Q8IU68 726 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 TPH2Q8IWU9 490 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 TCEAL8Q8IYN2 117 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 SPEM1Q8N4L4 309 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 SHKBP1Q8TBC3 707 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 ZMAT2Q96NC0 199 aaKnown RBP11.45□□□□□ -0.58
SF3B3-204ENST00000563739 CORO1BQ9BR76 489 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 CRISPLD1Q9H336 500 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 SMOC1Q9H4F8 434 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 BRD9Q9H8M2 597 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 PRMT7Q9NVM4 692 aaPredicted RBP11.45□□□□□ -0.58
SF3B3-204ENST00000563739 MRPS17Q9Y2R5 130 aaKnown RBP11.45□□□□□ -0.58
SF3B3-204ENST00000563739 PTPRDP23468 1912 aa11.45□□□□□ -0.58
SF3B3-204ENST00000563739 TNRC6BQ9UPQ9 1833 aaKnown RBP11.44□□□□□ -0.58
SF3B3-204ENST00000563739 NUP205Q92621 2012 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 LRRIQ4A6NIV6 560 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 MAN2B1O00754 1011 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 ABLIM1O14639 778 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 CCNT1O60563 726 aaKnown RBP11.44□□□□□ -0.58
SF3B3-204ENST00000563739 MICAL2O94851 1124 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 CTDNEP1O95476 244 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 PTPN2P17706 415 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 CXCL12P48061 93 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms