RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CXCL8P10145 99 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 IGFBP6P24592 240 aaPredicted RBP18.36■□□□□ 0.53
CLK3-210ENST00000563112 NMT1P30419 496 aaKnown RBP18.36■□□□□ 0.53
CLK3-210ENST00000563112 GTF2BQ00403 316 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 PPP2R3AQ06190 1150 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 PPM1LQ5SGD2 360 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 C3orf58Q8NDZ4 430 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 C18orf25Q96B23 403 aaPredicted RBP18.36■□□□□ 0.53
CLK3-210ENST00000563112 MSTO1Q9BUK6 570 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 KCNH6Q9H252 994 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 RPF1Q9H9Y2 349 aaKnown RBP18.36■□□□□ 0.53
CLK3-210ENST00000563112 CDY1Q9Y6F8 540 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 ZDBF2Q9HCK1 2354 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 H7C4K7 107 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 SYN3O14994 580 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 XYLBO75191 536 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 C8AP07357 584 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 STAT6P42226 847 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 NASPP49321 788 aaPredicted RBP18.35■□□□□ 0.53
CLK3-210ENST00000563112 UVSSAQ2YD98 709 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 MAP4K3Q8IVH8 894 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 FBXL6Q8N531 539 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 DDX12PQ92771 950 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 KIF12Q96FN5 646 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 TSPAN18Q96SJ8 248 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 HAPLN2Q9GZV7 340 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 ST6GALNAC4Q9H4F1 302 aa18.35■□□□□ 0.53
CLK3-210ENST00000563112 UBQLN1Q9UMX0 589 aaKnown RBP18.35■□□□□ 0.53
CLK3-210ENST00000563112 TTC26A0AVF1 554 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 MEFVO15553 781 aaPredicted RBP18.34■□□□□ 0.53
CLK3-210ENST00000563112 ADAM12O43184 909 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 GAP43P17677 238 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 HOXA9P31269 272 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 MCM4P33991 863 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 VARS2Q5ST30 1063 aaKnown RBP18.34■□□□□ 0.53
CLK3-210ENST00000563112 SLFN12LQ6IEE8 588 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 RTL10Q7L3V2 364 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 CD302Q8IX05 232 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 APPL2Q8NEU8 664 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 ASIC4Q96FT7 647 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 FIZ1Q96SL8 496 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 PANK2Q9BZ23 570 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.34■□□□□ 0.53
CLK3-210ENST00000563112 IGSF9Q9P2J2 1179 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 SEL1LQ9UBV2 794 aa18.34■□□□□ 0.53
CLK3-210ENST00000563112 ZNF318Q5VUA4 2279 aa18.33■□□□□ 0.53
CLK3-210ENST00000563112 A0A0B4J269 797 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 LACTBL1A8MY62 500 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 SPTLC2O15270 562 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 CYP3A5P20815 502 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 ELF1P32519 619 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 TNFSF9P41273 254 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 SPAG1Q07617 926 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 TDGQ13569 410 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 ZC2HC1CQ53FD0 456 aaPredicted RBP18.33■□□□□ 0.52
CLK3-210ENST00000563112 AXDND1Q5T1B0 1012 aaPredicted RBP18.33■□□□□ 0.52
CLK3-210ENST00000563112 ZNF720Q7Z2F6 126 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 SFR1Q86XK3 245 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 LINC00301Q8NCQ3 95 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 SLC7A14Q8TBB6 771 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 HVCN1Q96D96 273 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 FAM212AQ96EL1 285 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 SUSD3Q96L08 255 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 MRPL44Q9H9J2 332 aaKnown RBP18.33■□□□□ 0.52
CLK3-210ENST00000563112 KCNK12Q9HB15 430 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 TUBGCP4Q9UGJ1 667 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 POLIQ9UNA4 740 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 EXOC7Q9UPT5 735 aa18.33■□□□□ 0.52
CLK3-210ENST00000563112 PDCD11Q14690 1871 aaKnown RBP18.33■□□□□ 0.52
CLK3-210ENST00000563112 MYMKA6NI61 221 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 PPP6R2O75170 966 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 IDEP14735 1019 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 FSHRP23945 695 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 LRPAP1P30533 357 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 ENOX2Q16206 610 aaKnown RBP18.32■□□□□ 0.52
CLK3-210ENST00000563112 ADALQ6DHV7 355 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 SLC8B1Q6J4K2 584 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 RSPO2Q6UXX9 243 aaPredicted RBP18.32■□□□□ 0.52
CLK3-210ENST00000563112 GET4Q7L5D6 327 aaPredicted RBP18.32■□□□□ 0.52
CLK3-210ENST00000563112 GRASPQ7Z6J2 395 aaPredicted RBP18.32■□□□□ 0.52
CLK3-210ENST00000563112 NXPE3Q969Y0 559 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 LRRC27Q9C0I9 530 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 TFIP11Q9UBB9 837 aaKnown RBP18.32■□□□□ 0.52
CLK3-210ENST00000563112 EPS15L1Q9UBC2 864 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 GTF3C3Q9Y5Q9 886 aa18.32■□□□□ 0.52
CLK3-210ENST00000563112 ZFP37Q9Y6Q3 630 aaPredicted RBP18.32■□□□□ 0.52
CLK3-210ENST00000563112 ANKRD63C9JTQ0 380 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 CCL16O15467 120 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 N4BP1O75113 896 aaKnown RBP18.31■□□□□ 0.52
CLK3-210ENST00000563112 ARPP19P56211 112 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 POSTNQ15063 836 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 ZBTB6Q15916 424 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 CTXN3Q4LDR2 81 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 ZNF280DQ6N043 979 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 SLC39A4Q6P5W5 647 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 PDILTQ8N807 584 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 BEST2Q8NFU1 509 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 ZNF461Q8TAF7 563 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 DNAJC19Q96DA6 116 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 MYADMQ96S97 322 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms