RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CEP128Q6ZU80 1094 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 TRMT1LQ7Z2T5 733 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 HDXQ7Z353 690 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 RPAINQ86UA6 219 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 IFT20Q8IY31 132 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 EFCAB13Q8IY85 973 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 RPUSD2Q8IZ73 545 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 LRRC57Q8N9N7 239 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 TMEM35BQ8NCS4 154 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 TAS1R2Q8TE23 839 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 USP6NLQ92738 828 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 CFHR5Q9BXR6 569 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 TSPYL1Q9H0U9 437 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 VIPAS39Q9H9C1 493 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 PTPRHQ9HD43 1115 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.05□□□□□ -1.12
VPS39-204ENST00000561818 OGFRQ9NZT2 677 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 RASAL2Q9UJF2 1139 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 NOCTQ9UK39 431 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 GNEQ9Y223 722 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 PASKQ96RG2 1323 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 A0A1B0GUA9 196 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 TMEM88BA6NKF7 163 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 TMCO5BA8MYB1 307 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 FTLP02792 175 aaPredicted RBP8.04□□□□□ -1.12
VPS39-204ENST00000561818 CYP1A2P05177 515 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 SKIP12755 728 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 SMPD1P17405 629 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 GNA15P30679 374 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 ACOT2P49753 483 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 GSCP56915 257 aaPredicted RBP8.04□□□□□ -1.12
VPS39-204ENST00000561818 RBP5P82980 135 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 PTPN11Q06124 597 aaPredicted RBP8.04□□□□□ -1.12
VPS39-204ENST00000561818 CUL1Q13616 776 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 ACAP1Q15027 740 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 CLEC16AQ2KHT3 1053 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 GLIPR1L2Q4G1C9 344 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 ZNF667Q5HYK9 610 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 SLC27A1Q6PCB7 646 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 EMBQ6PCB8 327 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 CREG2Q8IUH2 290 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 CNPY4Q8N129 248 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 KRT222Q8N1A0 295 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 LRRC52Q8N7C0 313 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 SPATA4Q8NEY3 305 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 BEST2Q8NFU1 509 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 HES6Q96HZ4 224 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 ZNF560Q96MR9 790 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 ACAP3Q96P50 834 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS39-204ENST00000561818 SH2D3AQ9BRG2 576 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 TLR10Q9BXR5 811 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 IRX2Q9BZI1 471 aaPredicted RBP8.04□□□□□ -1.12
VPS39-204ENST00000561818 TRIM6Q9C030 488 aaPredicted RBP8.04□□□□□ -1.12
VPS39-204ENST00000561818 RAB17Q9H0T7 212 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 MED4Q9NPJ6 270 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 PARVAQ9NVD7 372 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 CTTNBP2NLQ9P2B4 639 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 PARP2Q9UGN5 583 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 PCDHGC3Q9UN70 934 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 CASP8AP2Q9UKL3 1982 aa8.04□□□□□ -1.12
VPS39-204ENST00000561818 MROH7Q68CQ1 1323 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 C17orf102A2RUQ5 167 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 RCCD1A6NED2 376 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 A6NNZ2 444 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 MYO1FO00160 1098 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 HAS3O00219 553 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 PSTPIP1O43586 416 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 FAM189A1O60320 539 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 ECM2O94769 699 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 WEE2P0C1S8 567 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 RARBP10826 455 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 ZSCAN20P17040 1043 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 CYP3A5P20815 502 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 CTNNA2P26232 953 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 CLCN3P51790 818 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 CRYBB1P53674 252 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 LACTBP83111 547 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 LMNB2Q03252 620 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 PTP4A2Q12974 167 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 PAK2Q13177 524 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 DHX34Q14147 1143 aaKnown RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 MFSD10Q14728 455 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 TMEM132DQ14C87 1099 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 ENOX2Q16206 610 aaKnown RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 TUBB8Q3ZCM7 444 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 HSP90B2PQ58FF3 399 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 CST9Q5W186 159 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 CRELD2Q6UXH1 353 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 SYDE1Q6ZW31 735 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 CROCCP2Q86T23 111 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 SESTD1Q86VW0 696 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 TRIM50Q86XT4 487 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 PHF13Q86YI8 300 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 ARHGEF19Q8IW93 802 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 RASGEF1CQ8N431 466 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 LRRC71Q8N4P6 559 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 C7orf31Q8N865 590 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 USP38Q8NB14 1042 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms