RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 C2CD4DB7Z1M9 353 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 ADAM12O43184 909 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 RPL9P32969 192 aaKnown RBP17.06■□□□□ 0.32
VPS39-203ENST00000561797 DNM1Q05193 864 aaKnown RBP17.06■□□□□ 0.32
VPS39-203ENST00000561797 ENOX2Q16206 610 aaKnown RBP17.06■□□□□ 0.32
VPS39-203ENST00000561797 KYAT1Q16773 422 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 PDXDC1Q6P996 788 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 SHC4Q6S5L8 630 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 KREMEN2Q8NCW0 462 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 PLEKHA4Q9H4M7 779 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 SEL1LQ9UBV2 794 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 RAPGEFL1Q9UHV5 662 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 SCN1AP35498 2009 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 DOCK8Q8NF50 2099 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 FAM189A1O60320 539 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 GCNT3O95395 438 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 OR1D2P34982 312 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 ME1P48163 572 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 ACOT2P49753 483 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 AXDND1Q5T1B0 1012 aaPredicted RBP17.05■□□□□ 0.32
VPS39-203ENST00000561797 ADALQ6DHV7 355 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 C15orf39Q6ZRI6 1047 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 CMASQ8NFW8 434 aaPredicted RBP17.05■□□□□ 0.32
VPS39-203ENST00000561797 KCNG4Q8TDN1 519 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 HDAC7Q8WUI4 952 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 SMG7Q92540 1137 aaKnown RBP17.05■□□□□ 0.32
VPS39-203ENST00000561797 HVCN1Q96D96 273 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 PIDD1Q9HB75 910 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 CFAP45Q9UL16 551 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 PCDHA7Q9UN72 937 aa17.05■□□□□ 0.32
VPS39-203ENST00000561797 PPP1R37O75864 691 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 C1RP00736 705 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 MCM4P33991 863 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 GUCY2FP51841 1108 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 CASP5P51878 434 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 KCNA1Q09470 495 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 E2F4Q16254 413 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 ATL3Q6DD88 541 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 SLFN12LQ6IEE8 588 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 RSPO2Q6UXX9 243 aaPredicted RBP17.04■□□□□ 0.32
VPS39-203ENST00000561797 CCDC149Q6ZUS6 474 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 ANKS3Q6ZW76 656 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 TDRD5Q8NAT2 981 aaKnown RBP17.04■□□□□ 0.32
VPS39-203ENST00000561797 EDAQ92838 391 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 ACCSQ96QU6 501 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 STRA6Q9BX79 667 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 MTRRQ9UBK8 725 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 FBXW11Q9UKB1 542 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 CPSF3Q9UKF6 684 aaKnown RBP17.04■□□□□ 0.32
VPS39-203ENST00000561797 AGO2Q9UKV8 859 aaKnown RBP17.04■□□□□ 0.32
VPS39-203ENST00000561797 UBQLN1Q9UMX0 589 aaKnown RBP17.04■□□□□ 0.32
VPS39-203ENST00000561797 CDY1Q9Y6F8 540 aa17.04■□□□□ 0.32
VPS39-203ENST00000561797 TULP1O00294 542 aaPredicted RBP17.03■□□□□ 0.32
VPS39-203ENST00000561797 XPOTO43592 962 aaKnown RBP17.03■□□□□ 0.32
VPS39-203ENST00000561797 ZMYND10O75800 440 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 ZXDAP98168 799 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 ZBTB6Q15916 424 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 L1TD1Q5T7N2 865 aaKnown RBP17.03■□□□□ 0.32
VPS39-203ENST00000561797 JADE1Q6IE81 842 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 CCDC65Q8IXS2 484 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 SYCP3Q8IZU3 236 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 IQUBQ8NA54 791 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 POMGNT1Q8WZA1 660 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 ZNF707Q96C28 371 aaPredicted RBP17.03■□□□□ 0.32
VPS39-203ENST00000561797 FGFBP2Q9BYJ0 223 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 LRRC27Q9C0I9 530 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 TNMDQ9H2S6 317 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 CUEDC2Q9H467 287 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 OLFML3Q9NRN5 406 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 KBTBD4Q9NVX7 518 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 ZDHHC7Q9NXF8 308 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 FAM13BQ9NYF5 915 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 LIMD1Q9UGP4 676 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 EXOC7Q9UPT5 735 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 PCDHB13Q9Y5F0 798 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 TECTAO75443 2155 aa17.03■□□□□ 0.32
VPS39-203ENST00000561797 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.02■□□□□ 0.32
VPS39-203ENST00000561797 FRMD3A2A2Y4 597 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 PRR33A8MZF0 331 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 POLR2DO15514 142 aaKnown RBP17.02■□□□□ 0.32
VPS39-203ENST00000561797 PRPF6O94906 941 aaKnown RBP17.02■□□□□ 0.32
VPS39-203ENST00000561797 ARPP19P56211 112 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 RAB33AQ14088 237 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 PTPN21Q16825 1174 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 VARS2Q5ST30 1063 aaKnown RBP17.02■□□□□ 0.32
VPS39-203ENST00000561797 LIN9Q5TKA1 542 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 CD302Q8IX05 232 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 PLCD3Q8N3E9 789 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 ACSF2Q96CM8 615 aaPredicted RBP17.02■□□□□ 0.32
VPS39-203ENST00000561797 CHAMP1Q96JM3 812 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 SUSD3Q96L08 255 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 PRKD2Q9BZL6 878 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 RCOR1Q9UKL0 485 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 USTQ9Y2C2 406 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 ZDHHC9Q9Y397 364 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 BACE2Q9Y5Z0 518 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 STYXL1Q9Y6J8 313 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 NOTCH4Q99466 2003 aa17.02■□□□□ 0.32
VPS39-203ENST00000561797 TSC2P49815 1807 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 SYN3O14994 580 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms