RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.82□□□□□ -1.48
VPS13C-209ENST00000560637 PALB2Q86YC2 1186 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 DAW1Q8N136 415 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 NME8Q8N427 588 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 RBBP8NLQ8NC74 664 aaPredicted RBP5.82□□□□□ -1.48
VPS13C-209ENST00000560637 B3GALT6Q96L58 329 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 PCYT2Q99447 389 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 MTIF3Q9H2K0 278 aaKnown RBP5.82□□□□□ -1.48
VPS13C-209ENST00000560637 RNF39Q9H2S5 420 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 RSAD1Q9HA92 442 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 ABHD10Q9NUJ1 306 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 CYB561D2O14569 222 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 MAP3K6O95382 1288 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 FTLP02792 175 aaPredicted RBP5.82□□□□□ -1.48
VPS13C-209ENST00000560637 ACO1P21399 889 aaKnown RBP5.82□□□□□ -1.48
VPS13C-209ENST00000560637 RABGGTBP53611 331 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 PTENP60484 403 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 NCAPHQ15003 741 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 EDRF1Q3B7T1 1238 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 ZNF697Q5TEC3 545 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 SDHAF4Q5VUM1 108 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 CAPN12Q6ZSI9 719 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 FRMD5Q7Z6J6 570 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 TAX1BP1Q86VP1 789 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 TNS4Q8IZW8 715 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 THEM5Q8N1Q8 247 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 SLC35F6Q8N357 371 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 CCDC33Q8N5R6 958 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 GPR152Q8TDT2 470 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 ACSF2Q96CM8 615 aaPredicted RBP5.82□□□□□ -1.48
VPS13C-209ENST00000560637 CARD6Q9BX69 1037 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 HEMGNQ9BXL5 484 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 TMEM117Q9H0C3 514 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 OLFML3Q9NRN5 406 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 CNOT8Q9UFF9 292 aaKnown RBP5.82□□□□□ -1.48
VPS13C-209ENST00000560637 MAFBQ9Y5Q3 323 aaPredicted RBP5.82□□□□□ -1.48
VPS13C-209ENST00000560637 TCHHQ07283 1943 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 URB1O60287 2271 aaKnown RBP5.82□□□□□ -1.48
VPS13C-209ENST00000560637 GOLGA6L9A6NEM1 432 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 EIF3DO15371 548 aaKnown RBP eCLIP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 TGFB1I1O43294 461 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 RNF8O76064 485 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 NDUFA10O95299 355 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ANXA13P27216 316 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 TM4SF4P48230 202 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 NOVP48745 357 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 PURAQ00577 322 aaKnown RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 CYP24A1Q07973 514 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ZNF211Q13398 564 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SNX1Q13596 522 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 FAM102AQ5T9C2 384 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 IQCEQ6IPM2 695 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SPIRE2Q8WWL2 714 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 HSPH1Q92598 858 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 TIPINQ9BVW5 301 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 C17orf75Q9HAS0 396 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 RRAGDQ9NQL2 400 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 BCCIPQ9P287 314 aaKnown RBP eCLIP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 IMPACTQ9P2X3 320 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 APEX2Q9UBZ4 518 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ANAPC7Q9UJX3 599 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 UBE4BO95155 1302 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 A0A1W2PQ45 241 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 A0A1W2PQY0 241 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 RASSF10A6NK89 507 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ADCY6O43306 1168 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 NCK2O43639 380 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 GAS2O43903 313 aaKnown RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 KPNA6O60684 536 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SRGAP2O75044 1071 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 GJB6O95452 261 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 GYPCP04921 128 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 OR4Q2P0C623 313 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ZNF865P0CJ78 1059 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 IRF1P10914 325 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 EN2P19622 333 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ICAM3P32942 547 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 GNL1P36915 607 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 GATMP50440 423 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 IKBKEQ14164 716 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 KRT81Q14533 505 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 RPS6KA1Q15418 735 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 RWDD4Q6NW29 188 aaKnown RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 TRIM65Q6PJ69 517 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 MMS22LQ6ZRQ5 1243 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SH3RF1Q7Z6J0 888 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 TTC30AQ86WT1 665 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 MAP4K3Q8IVH8 894 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 RNF139Q8WU17 664 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ZNF560Q96MR9 790 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 FAM118BQ9BPY3 351 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 DHX33Q9H6R0 707 aaKnown RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ENTPD7Q9NQZ7 604 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 GTF3C4Q9UKN8 822 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 FAN1Q9Y2M0 1017 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ADAMTSL1Q8N6G6 1762 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 LRRD1A4D1F6 860 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 LRRIQ3A6PVS8 624 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 EPHB6O15197 1021 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SGPL1O95470 568 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms