RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 NFIBO00712 420 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 TP73O15350 636 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 DNAJC8O75937 253 aaPredicted RBP12.06□□□□□ -0.48
CUX1-218ENST00000560541 MMP10P09238 476 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 SSTR3P32745 418 aaPredicted RBP12.06□□□□□ -0.48
CUX1-218ENST00000560541 CCDC15Q0P6D6 951 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 SPP2Q13103 211 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 SNRNP35Q16560 246 aaKnown RBP12.06□□□□□ -0.48
CUX1-218ENST00000560541 UGCGQ16739 394 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 FAM102BQ5T8I3 360 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 PRUNE1Q86TP1 453 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 CPXCR1Q8N123 301 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 KCTD17Q8N5Z5 321 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 MXRA8Q9BRK3 442 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 MRPL11Q9Y3B7 192 aaKnown RBP12.06□□□□□ -0.48
CUX1-218ENST00000560541 NRXN2Q9P2S2 1712 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 ANKRD31Q8N7Z5 1873 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 DPPA5A6NC42 116 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.06□□□□□ -0.48
CUX1-218ENST00000560541 UBOX5O94941 541 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 PLS3P13797 630 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 GJC1P36383 396 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 CD151P48509 253 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 PDE6CP51160 858 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 NUGGCQ68CJ6 796 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 B3GNT9Q6UX72 402 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 TAOK1Q7L7X3 1001 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 SERPINA10Q9UK55 444 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 O00370 1275 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 GHRP10912 638 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 ADSSP30520 456 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 GCLCP48506 637 aaPredicted RBP12.06□□□□□ -0.48
CUX1-218ENST00000560541 KCNJ2P63252 427 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 CYP1B1Q16678 543 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 KIF2BQ8N4N8 673 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 PHC3Q8NDX5 983 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 MASTLQ96GX5 879 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 EHMT1Q9H9B1 1298 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 ZFATQ9P243 1243 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 SLC12A4Q9UP95 1085 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 TMX2Q9Y320 296 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 C2CD2Q9Y426 696 aa12.06□□□□□ -0.48
CUX1-218ENST00000560541 SPATA31A6Q5VVP1 1343 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 hCG_2014768A0A024R1R8 64 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 GGPS1O95749 300 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 CYP1A2P05177 515 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 P4HBP07237 508 aaKnown RBP12.05□□□□□ -0.48
CUX1-218ENST00000560541 GZMAP12544 262 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 YWHABP31946 246 aaKnown RBP12.05□□□□□ -0.48
CUX1-218ENST00000560541 ABL2P42684 1182 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 MFAP3P55082 362 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 ITIH4Q14624 930 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 SHC3Q92529 594 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 RANBP17Q9H2T7 1088 aaKnown RBP12.05□□□□□ -0.48
CUX1-218ENST00000560541 GTF3C4Q9UKN8 822 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 RBBP6Q7Z6E9 1792 aaKnown RBP12.05□□□□□ -0.48
CUX1-218ENST00000560541 MGRN1O60291 552 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 SNX3O60493 162 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 FUT4P22083 530 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 MAPK4P31152 587 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 GBP1P32455 592 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 ITGA8P53708 1063 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 MPP2Q14168 576 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 LMBRD2Q68DH5 695 aaPredicted RBP12.05□□□□□ -0.48
CUX1-218ENST00000560541 CYFIP1Q7L576 1253 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 MAGEC3Q8TD91 643 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 PSPC1Q8WXF1 523 aaKnown RBP12.05□□□□□ -0.48
CUX1-218ENST00000560541 CPA5Q8WXQ8 436 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 P3H4Q92791 437 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 IQCGQ9H095 443 aaKnown RBP12.05□□□□□ -0.48
CUX1-218ENST00000560541 NSRP1Q9H0G5 558 aaKnown RBP12.05□□□□□ -0.48
CUX1-218ENST00000560541 STMN4Q9H169 189 aaPredicted RBP12.05□□□□□ -0.48
CUX1-218ENST00000560541 OCEL1Q9H607 264 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 CCPG1Q9ULG6 757 aa12.05□□□□□ -0.48
CUX1-218ENST00000560541 R3HDM2Q9Y2K5 976 aaKnown RBP12.05□□□□□ -0.48
CUX1-218ENST00000560541 THSD7AQ9UPZ6 1657 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 NAT1P18440 290 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 DGKZQ13574 1117 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 VSTM1Q6UX27 236 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 CYP4X1Q8N118 509 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 HELQQ8TDG4 1101 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 CHURC1Q8WUH1 139 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 RUNDC3BQ96NL0 473 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 PCMTD2Q9NV79 361 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 RHBDL2Q9NX52 303 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 LNPEPQ9UIQ6 1025 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 USP20Q9Y2K6 914 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 DHX15O43143 795 aaKnown RBP12.04□□□□□ -0.48
CUX1-218ENST00000560541 THAP12O43422 761 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 EIF2AK2P19525 551 aaKnown RBP12.04□□□□□ -0.48
CUX1-218ENST00000560541 ADCY8P40145 1251 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 QARSP47897 775 aaKnown RBP12.04□□□□□ -0.48
CUX1-218ENST00000560541 CDR2Q01850 454 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 KRT39Q6A163 491 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 RIT2Q99578 217 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 PNMA3Q9UL41 463 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 SLX4Q8IY92 1834 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 P4HA2O15460 535 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 ENTPD3O75355 529 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 MTA2O94776 668 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms