RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	ZNF529	Q6P280	563 aa		4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	AMIGO2	Q86SJ2	522 aa		4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	RASSF3	Q86WH2	238 aa		4.08	□□□□□ -1.76
SPG11-222	ENST00000560435		Q8NA96	180 aa		4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	SH3TC2	Q8TF17	1288 aa		4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	NUP133	Q8WUM0	1156 aa		4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	MARS2	Q96GW9	593 aa	Known RBP	4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	UHRF1	Q96T88	793 aa	Predicted RBP	4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	OSBPL2	Q9H1P3	480 aa		4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	KANSL2	Q9H9L4	492 aa		4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	LANCL2	Q9NS86	450 aa		4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	CDK11A	Q9UQ88	783 aa	Predicted RBP	4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	NOC2L	Q9Y3T9	749 aa	Known RBP	4.08	□□□□□ -1.76
SPG11-222	ENST00000560435	FKBP9	O95302	570 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	ELFN1	P0C7U0	828 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	PRR35	P0CG20	571 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	CBSL	P0DN79	551 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	CBS	P35520	551 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	ADCYAP1R1	P41586	468 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	IL2	P60568	153 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	TUBA4A	P68366	448 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	PCBP1	Q15365	356 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	NFE2L2	Q16236	605 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	UGT8	Q16880	541 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	KLHL22	Q53GT1	634 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	FAM180A	Q6UWF9	173 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	SEM1	Q6ZVN7	128 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	FKBP9P1	Q75LS8	142 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	PQLC1	Q8N2U9	271 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	SEMA6D	Q8NFY4	1073 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	CASKIN2	Q8WXE0	1202 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	TFAP2B	Q92481	460 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	SLC5A5	Q92911	643 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	RPL36AL	Q969Q0	106 aa	Known RBP	4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	EAF2	Q96CJ1	260 aa	Predicted RBP	4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	FBXL20	Q96IG2	436 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	ADGRE3	Q9BY15	652 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	ADAM21	Q9UKJ8	722 aa		4.07	□□□□□ -1.76
SPG11-222	ENST00000560435	TEX33	O43247	280 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	ALAS1	P13196	640 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	NOMO3	P69849	1222 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	GRM1	Q13255	1194 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	KLF9	Q13886	244 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	NOMO1	Q15155	1222 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	SEPT7	Q16181	437 aa	Known RBP	4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	FSCN1	Q16658	493 aa	Known RBP	4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	NOMO2	Q5JPE7	1267 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	OR2W6P	Q8NHA6	318 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	HOXB13	Q92826	284 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	RAX2	Q96IS3	184 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	SEMA4C	Q9C0C4	833 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	SENP6	Q9GZR1	1112 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	EMC7	Q9NPA0	242 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	SLC23A1	Q9UHI7	598 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	DPP7	Q9UHL4	492 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	BTBD3	Q9Y2F9	522 aa		4.06	□□□□□ -1.76
SPG11-222	ENST00000560435	ZNF521	Q96K83	1311 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435		A0A1W2PS29	197 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	KEL	P23276	732 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	PER3	P56645	1201 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	TFF2	Q03403	129 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	SLFN5	Q08AF3	891 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	FHL1	Q13642	323 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	PDCD1	Q15116	288 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	PTPRR	Q15256	657 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	ETFDH	Q16134	617 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	CNNM4	Q6P4Q7	775 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	ZNF517	Q6ZMY9	492 aa	Predicted RBP	4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	AHI1	Q8N157	1196 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	PPM1K	Q8N3J5	372 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	FITM2	Q8N6M3	262 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	SPATA3	Q8NHX4	192 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	STON2	Q8WXE9	905 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	WAC	Q9BTA9	647 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	INTS13	Q9NVM9	706 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	SCOC	Q9UIL1	159 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	EDAR	Q9UNE0	448 aa		4.05	□□□□□ -1.76
SPG11-222	ENST00000560435	LINC00473	A8K010	186 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	ADM5	C9JUS6	153 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	GCOM1	H8Y6P7	765 aa	Predicted RBP	4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	MOSPD3	O75425	235 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	FPR1	P21462	350 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	ENPP1	P22413	925 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	CCKBR	P32239	447 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	CCT4	P50991	539 aa	Known RBP	4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	FOXG1	P55316	489 aa	Predicted RBP	4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	CDK17	Q00537	523 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	TCEA2	Q15560	299 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	TXNRD1	Q16881	649 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	MORN5	Q5VZ52	161 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	ZNF782	Q6ZMW2	699 aa	Predicted RBP	4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	UBE3B	Q7Z3V4	1068 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	TSPEAR	Q8WU66	669 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	PGBD1	Q96JS3	809 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	ACAP3	Q96P50	834 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	MYOC	Q99972	504 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	RBM12	Q9NTZ6	932 aa	Known RBP	4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	TMEM140	Q9NV12	185 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	AJAP1	Q9UKB5	411 aa	Predicted RBP	4.04	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms