RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 ING5Q8WYH8 240 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 ELSPBP1Q96BH3 223 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 ZSCAN31Q96LW9 406 aaPredicted RBP10.05□□□□□ -0.8
HDDC3-204ENST00000559834 CYP4F11Q9HBI6 524 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 ZFP14Q9HCL3 533 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 LTB4R2Q9NPC1 389 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 KMT5AQ9NQR1 393 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 MTF2Q9Y483 593 aaPredicted RBP10.05□□□□□ -0.8
HDDC3-204ENST00000559834 PCDHGA2Q9Y5H1 932 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 CACNA1IQ9P0X4 2223 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 DOCK6Q96HP0 2047 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 EP300Q09472 2414 aaPredicted RBP10.04□□□□□ -0.8
HDDC3-204ENST00000559834 I3L4J1 428 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 LAD1O00515 517 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 SPTLC1O15269 473 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 HIP1RO75146 1068 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 LRRN2O75325 713 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 EDN1P05305 212 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 KCNE1P15382 129 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 SDHBP21912 280 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 MARCKSP29966 332 aaPredicted RBP10.04□□□□□ -0.8
HDDC3-204ENST00000559834 RPS9P46781 194 aaKnown RBP10.04□□□□□ -0.8
HDDC3-204ENST00000559834 SMTNP53814 917 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 ROR1Q01973 937 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 ADCY1Q08828 1119 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 STRN3Q13033 797 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 PTGDRQ13258 359 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 TPRG1Q6ZUI0 275 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 CCDC83Q8IWF9 413 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 TCEAL8Q8IYN2 117 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 MAML2Q8IZL2 1156 aaPredicted RBP10.04□□□□□ -0.8
HDDC3-204ENST00000559834 C4orf32Q8N8J7 132 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 CLDN23Q96B33 292 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 RMDN1Q96DB5 314 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 ZNF512Q96ME7 567 aaPredicted RBP10.04□□□□□ -0.8
HDDC3-204ENST00000559834 CORO1BQ9BR76 489 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 NTPCRQ9BSD7 190 aaKnown RBP10.04□□□□□ -0.8
HDDC3-204ENST00000559834 TRMT61BQ9BVS5 477 aaKnown RBP10.04□□□□□ -0.8
HDDC3-204ENST00000559834 TIPINQ9BVW5 301 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 TARS2Q9BW92 718 aaKnown RBP10.04□□□□□ -0.8
HDDC3-204ENST00000559834 CDT1Q9H211 546 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 GOLGA2P5Q9HBQ8 144 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 PTPRHQ9HD43 1115 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 ZSCAN32Q9NX65 697 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 PPP4R2Q9NY27 417 aa10.04□□□□□ -0.8
HDDC3-204ENST00000559834 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.04□□□□□ -0.8
HDDC3-204ENST00000559834 WDR27A2RRH5 827 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 E9PMD0 336 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 TBC1D4O60343 1298 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 CD72P21854 359 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 IGFBP6P24592 240 aaPredicted RBP10.03□□□□□ -0.8
HDDC3-204ENST00000559834 U2AF2P26368 475 aaKnown RBP eCLIP10.03□□□□□ -0.8
HDDC3-204ENST00000559834 MCM4P33991 863 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 NRLP54845 237 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 SOX4Q06945 474 aaPredicted RBP10.03□□□□□ -0.8
HDDC3-204ENST00000559834 ST3GAL1Q11201 340 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 MRPL58Q14197 206 aaKnown RBP10.03□□□□□ -0.8
HDDC3-204ENST00000559834 PPP2R5DQ14738 602 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 SLC5A9Q2M3M2 681 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 CTXN3Q4LDR2 81 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 TANGO2Q6ICL3 276 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 RINT1Q6NUQ1 792 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 MPZL3Q6UWV2 235 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 DTHD1Q6ZMT9 781 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 PDZD4Q76G19 769 aaPredicted RBP10.03□□□□□ -0.8
HDDC3-204ENST00000559834 KCTD17Q8N5Z5 321 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 CEP120Q8N960 986 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 IGSF22Q8N9C0 903 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 SUMF1Q8NBK3 374 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 LEMD2Q8NC56 503 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 C3orf58Q8NDZ4 430 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 DNASE1L2Q92874 299 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 IRF7Q92985 503 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 SUSD3Q96L08 255 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 OXCT2Q9BYC2 517 aaPredicted RBP10.03□□□□□ -0.8
HDDC3-204ENST00000559834 FAM126AQ9BYI3 521 aaPredicted RBP10.03□□□□□ -0.8
HDDC3-204ENST00000559834 BRD9Q9H8M2 597 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 SH2B1Q9NRF2 756 aaPredicted RBP10.03□□□□□ -0.8
HDDC3-204ENST00000559834 HEBP1Q9NRV9 189 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 CNTN3Q9P232 1028 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 ARHGAP28Q9P2N2 729 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 NCDNQ9UBB6 729 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 FBXL5Q9UKA1 691 aa10.03□□□□□ -0.8
HDDC3-204ENST00000559834 GVINP1Q7Z2Y8 2422 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 H0YCG3 227 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 SLC16A4O15374 487 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 TOM1L1O75674 476 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 PSMC3P17980 439 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 PROZP22891 400 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 TARSP26639 723 aaKnown RBP10.02□□□□□ -0.81
HDDC3-204ENST00000559834 PRPHP41219 470 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 FAM78AQ5JUQ0 283 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 ZNF280DQ6N043 979 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 MAMSTRQ6ZN01 415 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 C1orf186Q6ZWK4 172 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 DCLK2Q8N568 766 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 ZBTB44Q8NCP5 570 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 SPIRE2Q8WWL2 714 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 DDX12PQ92771 950 aa10.02□□□□□ -0.81
HDDC3-204ENST00000559834 E2F7Q96AV8 911 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms