RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SLC5A3P53794 718 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 SRSF2Q01130 221 aaKnown RBP6.32□□□□□ -1.4
VPS13C-208ENST00000559119 SEM1Q6ZVN7 128 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 FITM2Q8N6M3 262 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 CYFIP2Q96F07 1278 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 MARS2Q96GW9 593 aaKnown RBP6.32□□□□□ -1.4
VPS13C-208ENST00000559119 PNKPQ96T60 521 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 SLKQ9H2G2 1235 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-208ENST00000559119 CAAP1Q9H8G2 361 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 UNKLQ9H9P5 680 aaKnown RBP6.32□□□□□ -1.4
VPS13C-208ENST00000559119 VTA1Q9NP79 307 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 DNAJC28Q9NX36 388 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 KCTD5Q9NXV2 234 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 SLC17A6Q9P2U8 582 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 FRMD4BQ9Y2L6 1034 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 MYADML2A6NDP7 307 aa6.31□□□□□ -1.4
VPS13C-208ENST00000559119 INO80B-WBP1J3KQ70 363 aa6.31□□□□□ -1.4
VPS13C-208ENST00000559119 GPR32O75388 356 aa6.31□□□□□ -1.4
VPS13C-208ENST00000559119 MATN4O95460 622 aa6.31□□□□□ -1.4
VPS13C-208ENST00000559119 NHLH1Q02575 133 aa6.31□□□□□ -1.4
VPS13C-208ENST00000559119 CT47A1Q5JQC4 288 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-208ENST00000559119 CCHCR1Q8TD31 782 aa6.31□□□□□ -1.4
VPS13C-208ENST00000559119 PDLIM2Q96JY6 352 aa6.31□□□□□ -1.4
VPS13C-208ENST00000559119 INO80BQ9C086 356 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-208ENST00000559119 RUVBL1Q9Y265 456 aaKnown RBP6.31□□□□□ -1.4
VPS13C-208ENST00000559119 FAM171A2A8MVW0 826 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 PEX1O43933 1283 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 PCSK1P29120 753 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 TMPRSS15P98073 1019 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 MGAT2Q10469 447 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 LNX2Q8N448 690 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS13C-208ENST00000559119 NUP133Q8WUM0 1156 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 AHCYL2Q96HN2 611 aaKnown RBP6.3□□□□□ -1.4
VPS13C-208ENST00000559119 MED15Q96RN5 788 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 GSTO2Q9H4Y5 243 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 WDR26Q9H7D7 661 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 C14orf119Q9NWQ9 140 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 DNM3Q9UQ16 869 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 PCDHGA2Q9Y5H1 932 aa6.3□□□□□ -1.4
VPS13C-208ENST00000559119 TRGV11A0A075B6L2 103 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 SLC6A9P48067 706 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 NOMO3P69849 1222 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 CREMQ03060 361 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 STAT4Q14765 748 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 SEPT2Q15019 361 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 ATP2B3Q16720 1220 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 GEN1Q17RS7 908 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 NOMO2Q5JPE7 1267 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 AKNAD1Q5T1N1 836 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 NOP9Q86U38 636 aaKnown RBP6.29□□□□□ -1.4
VPS13C-208ENST00000559119 CHAC2Q8WUX2 184 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 KLK15Q9H2R5 256 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 MANSC1Q9H8J5 431 aa6.29□□□□□ -1.4
VPS13C-208ENST00000559119 TCRBV7S2A1N4TA0A589 114 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 CDHR4A6H8M9 788 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 LRRC3CA6NJW4 275 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 KIAA0391O15091 583 aaKnown RBP6.28□□□□□ -1.4
VPS13C-208ENST00000559119 RBMXL2O75526 392 aaKnown RBP6.28□□□□□ -1.4
VPS13C-208ENST00000559119 OSMP13725 252 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 CPEP16870 476 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 GPR3P46089 330 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 GLCCI1Q86VQ1 547 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 TBC1D15Q8TC07 691 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 SSH3Q8TE77 659 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 CCM2LQ9NUG4 571 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-208ENST00000559119 HSFX1Q9UBD0 423 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 TBX22Q9Y458 520 aa6.28□□□□□ -1.4
VPS13C-208ENST00000559119 ORC4O43929 436 aa6.27□□□□□ -1.41
VPS13C-208ENST00000559119 PROP1O75360 226 aa6.27□□□□□ -1.41
VPS13C-208ENST00000559119 C1QL1O75973 258 aa6.27□□□□□ -1.41
VPS13C-208ENST00000559119 DDCP20711 480 aa6.27□□□□□ -1.41
VPS13C-208ENST00000559119 MTM1Q13496 603 aa6.27□□□□□ -1.41
VPS13C-208ENST00000559119 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-208ENST00000559119 ASB6Q9NWX5 421 aa6.27□□□□□ -1.41
VPS13C-208ENST00000559119 FOLR3P41439 243 aa6.26□□□□□ -1.41
VPS13C-208ENST00000559119 MTNR1BP49286 362 aa6.26□□□□□ -1.41
VPS13C-208ENST00000559119 SF3B3Q15393 1217 aaKnown RBP6.26□□□□□ -1.41
VPS13C-208ENST00000559119 GRASPQ7Z6J2 395 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-208ENST00000559119 SRRM1Q8IYB3 904 aaKnown RBP6.26□□□□□ -1.41
VPS13C-208ENST00000559119 AFAP1L2Q8N4X5 818 aa6.26□□□□□ -1.41
VPS13C-208ENST00000559119 NLGN4YQ8NFZ3 816 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-208ENST00000559119 C7orf25Q9BPX7 421 aa6.26□□□□□ -1.41
VPS13C-208ENST00000559119 IL17RBQ9NRM6 502 aa6.26□□□□□ -1.41
VPS13C-208ENST00000559119 MYBBP1AQ9BQG0 1328 aaKnown RBP6.25□□□□□ -1.41
VPS13C-208ENST00000559119 YY2O15391 372 aa6.25□□□□□ -1.41
VPS13C-208ENST00000559119 ZFPL1O95159 310 aa6.25□□□□□ -1.41
VPS13C-208ENST00000559119 AMY1AP04745 511 aa6.25□□□□□ -1.41
VPS13C-208ENST00000559119 KRTAP10-11P60412 298 aa6.25□□□□□ -1.41
VPS13C-208ENST00000559119 FOXF2Q12947 444 aa6.25□□□□□ -1.41
VPS13C-208ENST00000559119 EPHA10Q5JZY3 1008 aa6.25□□□□□ -1.41
VPS13C-208ENST00000559119 PAPD7Q5XG87 772 aaKnown RBP6.25□□□□□ -1.41
VPS13C-208ENST00000559119 ZGPATQ8N5A5 531 aaKnown RBP6.25□□□□□ -1.41
VPS13C-208ENST00000559119 UROC1Q96N76 676 aa6.25□□□□□ -1.41
VPS13C-208ENST00000559119 GPR45Q9Y5Y3 372 aa6.25□□□□□ -1.41
VPS13C-208ENST00000559119 ARHGEF17Q96PE2 2063 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-208ENST00000559119 SLFN5Q08AF3 891 aa6.24□□□□□ -1.41
VPS13C-208ENST00000559119 DACT2Q5SW24 774 aa6.24□□□□□ -1.41
VPS13C-208ENST00000559119 OR2I1PQ8NGU4 316 aa6.24□□□□□ -1.41
VPS13C-208ENST00000559119 C11orf54Q9H0W9 315 aaPredicted RBP6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms