RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 TNNC2P02585 160 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 GTF2H1P32780 548 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 FMO5P49326 533 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 UBASH3AP57075 661 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 ZBTB6Q15916 424 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 DUOXA2Q1HG44 320 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 FILIP1LQ4L180 1135 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 PAN2Q504Q3 1202 aaKnown RBP10.39□□□□□ -0.75
CUX1-216ENST00000558469 C9orf50Q5SZB4 431 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 APTXQ7Z2E3 356 aaKnown RBP10.39□□□□□ -0.75
CUX1-216ENST00000558469 NT5DC4Q86YG4 428 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 TMEM130Q8N3G9 435 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 OR5B17Q8NGF7 314 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 NAP1L5Q96NT1 182 aaPredicted RBP10.39□□□□□ -0.75
CUX1-216ENST00000558469 CASD1Q96PB1 797 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 PPP1R10Q96QC0 940 aaKnown RBP10.39□□□□□ -0.75
CUX1-216ENST00000558469 TSPAN18Q96SJ8 248 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 ZBED2Q9BTP6 218 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 UBE2OQ9C0C9 1292 aaKnown RBP10.39□□□□□ -0.75
CUX1-216ENST00000558469 TMEM117Q9H0C3 514 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 MTIF3Q9H2K0 278 aaKnown RBP10.39□□□□□ -0.75
CUX1-216ENST00000558469 OCEL1Q9H607 264 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 TMEM8AQ9HCN3 771 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 DPP3Q9NY33 737 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 IFNKQ9P0W0 207 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 C2CD2Q9Y426 696 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 FSD2A1L4K1 749 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 INPPL1O15357 1258 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 AP5Z1O43299 807 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 XPOTO43592 962 aaKnown RBP10.38□□□□□ -0.75
CUX1-216ENST00000558469 C4BPAP04003 597 aaKnown RBP10.38□□□□□ -0.75
CUX1-216ENST00000558469 ATP2A2P16615 1042 aaKnown RBP10.38□□□□□ -0.75
CUX1-216ENST00000558469 MXI1P50539 228 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 GUCY2FP51841 1108 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 AP3M2P53677 418 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 MYL7Q01449 175 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 UBXN1Q04323 297 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 RNASELQ05823 741 aaKnown RBP10.38□□□□□ -0.75
CUX1-216ENST00000558469 GRIK3Q13003 919 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 BIRC3Q13489 604 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 SHHQ15465 462 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 CBWD6Q4V339 395 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 CBWD3Q5JTY5 395 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 CBWD5Q5RIA9 395 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 FKBP15Q5T1M5 1219 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 TDRD10Q5VZ19 366 aaKnown RBP10.38□□□□□ -0.75
CUX1-216ENST00000558469 KRT39Q6A163 491 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 MAMSTRQ6ZN01 415 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 SV2AQ7L0J3 742 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 TRAPPC11Q7Z392 1133 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 BEST2Q8NFU1 509 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 RNPC3Q96LT9 517 aaKnown RBP10.38□□□□□ -0.75
CUX1-216ENST00000558469 FAM193BQ96PV7 902 aaPredicted RBP10.38□□□□□ -0.75
CUX1-216ENST00000558469 SLC9A7Q96T83 725 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 GDF15Q99988 308 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 GRPEL1Q9HAV7 217 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 GOLGA2P5Q9HBQ8 144 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 RTN4Q9NQC3 1192 aaKnown RBP10.38□□□□□ -0.75
CUX1-216ENST00000558469 SLC38A7Q9NVC3 462 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 TBC1D13Q9NVG8 400 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 KANSL3Q9P2N6 904 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 TUBGCP4Q9UGJ1 667 aa10.38□□□□□ -0.75
CUX1-216ENST00000558469 UBQLN1Q9UMX0 589 aaKnown RBP10.38□□□□□ -0.75
CUX1-216ENST00000558469 A0A1B0GTH6 734 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 LGALS16A8MUM7 142 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 TEX33O43247 280 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 CBFA2T2O43439 604 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 N4BP1O75113 896 aaKnown RBP10.37□□□□□ -0.75
CUX1-216ENST00000558469 DDHD2O94830 711 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 GJB5O95377 273 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 VNN1O95497 513 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 ITGB3P05106 788 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 KRT19P08727 400 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 CYP3A5P20815 502 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 MLLT1Q03111 559 aaPredicted RBP10.37□□□□□ -0.75
CUX1-216ENST00000558469 SOX4Q06945 474 aaPredicted RBP10.37□□□□□ -0.75
CUX1-216ENST00000558469 CETN1Q12798 172 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 TRPC3Q13507 836 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 NR1I3Q14994 352 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 NAB2Q15742 525 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 ZACNQ401N2 412 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 RASIP1Q5U651 963 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 SCARA3Q6AZY7 606 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 SARM1Q6SZW1 724 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 C15orf39Q6ZRI6 1047 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 ZNF280BQ86YH2 543 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 HERC6Q8IVU3 1022 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 C1orf127Q8N9H9 656 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 FBXL13Q8NEE6 735 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 PHOSPHO2Q8TCD6 241 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 ZNF689Q96CS4 500 aaPredicted RBP10.37□□□□□ -0.75
CUX1-216ENST00000558469 YME1L1Q96TA2 773 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 CRACR2AQ9BSW2 395 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 MRPL9Q9BYD2 267 aaKnown RBP10.37□□□□□ -0.75
CUX1-216ENST00000558469 TRIM5Q9C035 493 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 XPO4Q9C0E2 1151 aaKnown RBP10.37□□□□□ -0.75
CUX1-216ENST00000558469 CACNG4Q9UBN1 327 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 ITGA11Q9UKX5 1188 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 AGAP1Q9UPQ3 857 aa10.37□□□□□ -0.75
CUX1-216ENST00000558469 CASTOR2A6NHX0 329 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms