RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 RNF180Q86T96 592 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 EFCAB13Q8IY85 973 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 TMEM192Q8IY95 271 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 SLAIN1Q8ND83 568 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 OLIG1Q8TAK6 271 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 EPS8L1Q8TE68 723 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 FAXDC2Q96IV6 333 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 CELF4Q9BZC1 486 aaKnown RBP13.41□□□□□ -0.26
SHMT2-233ENST00000557529 PLEKHA5Q9HAU0 1116 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 CDHR5Q9HBB8 845 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 APOBEC3GQ9HC16 384 aaKnown RBP13.41□□□□□ -0.26
SHMT2-233ENST00000557529 NOCTQ9UK39 431 aaKnown RBP13.41□□□□□ -0.26
SHMT2-233ENST00000557529 C2CD2Q9Y426 696 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 SCN10AQ9Y5Y9 1956 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 A0A0A6YYK5 440 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-233ENST00000557529 CLSTN1O94985 981 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 MOCS3O95396 460 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 SGPL1O95470 568 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 NPTXRO95502 500 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 ASGR1P07306 291 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 FGFR4P22455 802 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 YARSP54577 528 aaKnown RBP13.4□□□□□ -0.26
SHMT2-233ENST00000557529 NAP1L1P55209 391 aaKnown RBP13.4□□□□□ -0.26
SHMT2-233ENST00000557529 YWHAEP62258 255 aaKnown RBP13.4□□□□□ -0.26
SHMT2-233ENST00000557529 MRPS6P82932 125 aaKnown RBP13.4□□□□□ -0.26
SHMT2-233ENST00000557529 CDR2Q01850 454 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 TMEM132DQ14C87 1099 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 SLC10A6Q3KNW5 377 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 FAM47CQ5HY64 1035 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 JADE1Q6IE81 842 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 SPOPLQ6IQ16 392 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 NOP9Q86U38 636 aaKnown RBP13.4□□□□□ -0.26
SHMT2-233ENST00000557529 RPAINQ86UA6 219 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 SERINC5Q86VE9 423 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 ZNF677Q86XU0 584 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 RPUSD2Q8IZ73 545 aaKnown RBP13.4□□□□□ -0.26
SHMT2-233ENST00000557529 NIF3L1Q9GZT8 377 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 SEPT11Q9NVA2 429 aaKnown RBP13.4□□□□□ -0.26
SHMT2-233ENST00000557529 DERAQ9Y315 318 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 JRKLQ9Y4A0 524 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 NUB1Q9Y5A7 615 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 PCDHB2Q9Y5E7 798 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 TRPV2Q9Y5S1 764 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 MRFAP1Q9Y605 127 aa13.4□□□□□ -0.26
SHMT2-233ENST00000557529 THSD7BQ9C0I4 1608 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 CTIFO43310 598 aaKnown RBP13.39□□□□□ -0.27
SHMT2-233ENST00000557529 CST3P01034 146 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-233ENST00000557529 NFICP08651 508 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 TMEM253P0C7T8 217 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 GZMAP12544 262 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 ACO1P21399 889 aaKnown RBP13.39□□□□□ -0.27
SHMT2-233ENST00000557529 ATICP31939 592 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 MYL6P60660 151 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 PTPN11Q06124 597 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-233ENST00000557529 ZNF699Q32M78 642 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 PAPD7Q5XG87 772 aaKnown RBP13.39□□□□□ -0.27
SHMT2-233ENST00000557529 GDF6Q6KF10 455 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-233ENST00000557529 SLC47A2Q86VL8 602 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 MNS1Q8NEH6 495 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 SLC20A1Q8WUM9 679 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 CALR3Q96L12 384 aaKnown RBP13.39□□□□□ -0.27
SHMT2-233ENST00000557529 TSPAN18Q96SJ8 248 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 PACSIN1Q9BY11 444 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 TRIM6Q9C030 488 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-233ENST00000557529 CDC23Q9UJX2 597 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 CNTN6Q9UQ52 1028 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 PIN4Q9Y237 131 aaKnown RBP13.39□□□□□ -0.27
SHMT2-233ENST00000557529 PCDHB4Q9Y5E5 795 aa13.39□□□□□ -0.27
SHMT2-233ENST00000557529 ANKRD62A6NC57 917 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 MYCNP04198 464 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-233ENST00000557529 CHRNB2P17787 502 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 GALCP54803 685 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 WHAMMP3Q1A5X7 153 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 ZNF296Q8WUU4 475 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-233ENST00000557529 TMEM40Q8WWA1 233 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 CTNNBL1Q8WYA6 563 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-233ENST00000557529 ARID3AQ99856 593 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 TSEN34Q9BSV6 310 aaKnown RBP13.38□□□□□ -0.27
SHMT2-233ENST00000557529 ISCUQ9H1K1 167 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 HMX1Q9NP08 348 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-233ENST00000557529 TSKSQ9UJT2 592 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 ITGA11Q9UKX5 1188 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 PCDHGC5Q9Y5F6 944 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 CDY2AQ9Y6F7 541 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 CAPN6Q9Y6Q1 641 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 NCANO14594 1321 aa13.38□□□□□ -0.27
SHMT2-233ENST00000557529 MOXD2PA6NHM9 499 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 DYNC1I1O14576 645 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 MEFVO15553 781 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-233ENST00000557529 BUB1O43683 1085 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 RTN2O75298 545 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 INHAP05111 366 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 KRT19P08727 400 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 P4HA1P13674 534 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 AMPD2Q01433 879 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 FMO1Q01740 532 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 ZNF667Q5HYK9 610 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 TAF3Q5VWG9 929 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 TMEM270Q6UE05 265 aa13.37□□□□□ -0.27
SHMT2-233ENST00000557529 UBR7Q8N806 425 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms