RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 GCNT1Q02742 428 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 AOC3Q16853 763 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 GRIPAP1Q4V328 841 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 ZNF365Q70YC5 407 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 FAM160B2Q86V87 743 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 FBXL13Q8NEE6 735 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 CFAP61Q8NHU2 1237 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 PLEKHO2Q8TD55 490 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 BTBD6Q96KE9 485 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 CFAP57Q96MR6 1250 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 HERC5Q9UII4 1024 aaKnown RBP17.33■□□□□ 0.37
SHMT2-232ENST00000557487 ANAPC7Q9UJX3 599 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 NAALADL1Q9UQQ1 740 aa17.33■□□□□ 0.37
SHMT2-232ENST00000557487 NFKBIEO00221 500 aa17.33■□□□□ 0.36
SHMT2-232ENST00000557487 ATP2A2P16615 1042 aaKnown RBP17.33■□□□□ 0.36
SHMT2-232ENST00000557487 TAC1P20366 129 aa17.33■□□□□ 0.36
SHMT2-232ENST00000557487 RARRES1P49788 294 aa17.33■□□□□ 0.36
SHMT2-232ENST00000557487 YARSP54577 528 aaKnown RBP17.33■□□□□ 0.36
SHMT2-232ENST00000557487 BPIFB4P59827 614 aa17.33■□□□□ 0.36
SHMT2-232ENST00000557487 INPP5DQ92835 1189 aa17.33■□□□□ 0.36
SHMT2-232ENST00000557487 POP1Q99575 1024 aaKnown RBP17.33■□□□□ 0.36
SHMT2-232ENST00000557487 PITPNM3Q9BZ71 974 aa17.33■□□□□ 0.36
SHMT2-232ENST00000557487 LRMDAQ9H2I8 198 aa17.33■□□□□ 0.36
SHMT2-232ENST00000557487 CHST7Q9NS84 486 aa17.33■□□□□ 0.36
SHMT2-232ENST00000557487 SMG5Q9UPR3 1016 aaKnown RBP17.33■□□□□ 0.36
SHMT2-232ENST00000557487 TMX2Q9Y320 296 aa17.33■□□□□ 0.36
SHMT2-232ENST00000557487 L3MBTL1Q9Y468 752 aa17.33■□□□□ 0.36
SHMT2-232ENST00000557487 PRPF4O43172 522 aaKnown RBP eCLIP17.32■□□□□ 0.361e-8■■■□□ 17.5
SHMT2-232ENST00000557487 DCTN3O75935 186 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 CREB1P16220 341 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 IBSPP21815 317 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-232ENST00000557487 YY1P25490 414 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 ALDH3A1P30838 453 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 CETN2P41208 172 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 MKRN4PQ13434 485 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-232ENST00000557487 MPP2Q14168 576 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 RASA2Q15283 850 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 ZKSCAN8Q15776 578 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-232ENST00000557487 SNRNP35Q16560 246 aaKnown RBP17.32■□□□□ 0.36
SHMT2-232ENST00000557487 ZCCHC9Q8N567 271 aaKnown RBP17.32■□□□□ 0.36
SHMT2-232ENST00000557487 PARD3BQ8TEW8 1205 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 SH3TC2Q8TF17 1288 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 DDX27Q96GQ7 796 aaKnown RBP17.32■□□□□ 0.36
SHMT2-232ENST00000557487 SLC5A4Q9NY91 659 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 USH1CQ9Y6N9 552 aa17.32■□□□□ 0.36
SHMT2-232ENST00000557487 A0A1W2PRG0 241 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 UNGP13051 313 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 QARSP47897 775 aaKnown RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 RASSF2P50749 326 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 POLGP54098 1239 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 CACNB3P54284 484 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 KLF1Q13351 362 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 SNX1Q13596 522 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 RTKN2Q8IZC4 609 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 MCOLN2Q8IZK6 566 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 GDAP1Q8TB36 358 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 THOC1Q96FV9 657 aaKnown RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 RAB20Q9NX57 234 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 ZNF219Q9P2Y4 722 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 CHORDC1Q9UHD1 332 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 HNRNPCL1O60812 293 aaKnown RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 PROSCO94903 275 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 ADRB2P07550 413 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 TAL1P17542 331 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 RBM5P52756 815 aaKnown RBP eCLIP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 SPARCL1Q14515 664 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 CMPK2Q5EBM0 449 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 CGB2Q6NT52 195 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 TRIM72Q6ZMU5 477 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 BZW1Q7L1Q6 419 aaKnown RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 ECHDC2Q86YB7 292 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 SRRM1Q8IYB3 904 aaKnown RBP17.31■□□□□ 0.36
SHMT2-232ENST00000557487 KATNAL2Q8IYT4 538 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 TEX9Q8N6V9 391 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 MAML1Q92585 1016 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 SEMA4DQ92854 862 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 RMDN2Q96LZ7 410 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 MFSD14AQ96MC6 490 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 FBXL18Q96ME1 805 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 ADAM22Q9P0K1 906 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 CTNNAL1Q9UBT7 734 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 ZHX2Q9Y6X8 837 aa17.31■□□□□ 0.36
SHMT2-232ENST00000557487 RASA4BC9J798 803 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 RASA4O43374 803 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 DIAPH2O60879 1101 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 SF3A3Q12874 501 aaKnown RBP eCLIP17.3■□□□□ 0.366e-8■■□□□ 12.4
SHMT2-232ENST00000557487 LIN9Q5TKA1 542 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 IZUMO3Q5VZ72 239 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 CCDC174Q6PII3 467 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 NSMFQ6X4W1 530 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 SLC30A10Q6XR72 485 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 ANKS1BQ7Z6G8 1248 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 CPNE8Q86YQ8 564 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 MAP4K3Q8IVH8 894 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 RHOT1Q8IXI2 618 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-232ENST00000557487 FAXDC2Q96IV6 333 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 PNMA3Q9UL41 463 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 FER1L6Q2WGJ9 1857 aa17.3■□□□□ 0.36
SHMT2-232ENST00000557487 TISP43B9A030 160 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms