RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PACSIN1Q9BY11 444 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 HAPLN2Q9GZV7 340 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 FAM124BQ9H5Z6 455 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-229ENST00000557348 SALL4Q9UJQ4 1053 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 GGA2Q9UJY4 613 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 NOCTQ9UK39 431 aaKnown RBP13.56□□□□□ -0.24
SHMT2-229ENST00000557348 PASKQ96RG2 1323 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-229ENST00000557348 ABLIM1O14639 778 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 ALDH1A1P00352 501 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 TNNC2P02585 160 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 CLTAP09496 248 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 ZNF286BP0CG31 522 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 CYP11B1P15538 503 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 IGBP1P78318 339 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 RPS6KA1Q15418 735 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 SLFN11Q7Z7L1 901 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 PACS2Q86VP3 889 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 NT5DC4Q86YG4 428 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 RPUSD2Q8IZ73 545 aaKnown RBP13.55□□□□□ -0.24
SHMT2-229ENST00000557348 OLIG1Q8TAK6 271 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 COG1Q8WTW3 980 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 TRAPPC12Q8WVT3 735 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 ZNF516Q92618 1163 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 ANKRD36BP1Q96IX9 119 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 ADPGKQ9BRR6 497 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 SELENOOQ9BVL4 669 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 FAM204AQ9H8W3 233 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 HDAC6Q9UBN7 1215 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 GNEQ9Y223 722 aaKnown RBP13.55□□□□□ -0.24
SHMT2-229ENST00000557348 MCM3APO60318 1980 aa13.55□□□□□ -0.24
SHMT2-229ENST00000557348 GOLGA8KD6RF30 607 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 CLGNO14967 610 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 OPA1O60313 960 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 KPNA6O60684 536 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 ERLIN2O94905 339 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 F2P00734 622 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 TMEM191BP0C7N4 346 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 MYBL1P10243 752 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 NOP14P78316 857 aaKnown RBP13.54□□□□□ -0.24
SHMT2-229ENST00000557348 GPC5P78333 572 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 CUL2Q13617 745 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 NCOA4Q13772 614 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 SGSM1Q2NKQ1 1148 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 GJC2Q5T442 439 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-229ENST00000557348 YTHDF3Q7Z739 585 aaKnown RBP13.54□□□□□ -0.24
SHMT2-229ENST00000557348 CD302Q8IX05 232 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 LRRC57Q8N9N7 239 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 PNKPQ96T60 521 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 AP5M1Q9H0R1 490 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 RPF1Q9H9Y2 349 aaKnown RBP13.54□□□□□ -0.24
SHMT2-229ENST00000557348 IFT122Q9HBG6 1241 aa13.54□□□□□ -0.24
SHMT2-229ENST00000557348 ZSWIM8A7E2V4 1837 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 SMIM35A0A1B0GVV1 85 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 TULP1O00294 542 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 TNPO2O14787 897 aaKnown RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 CYP26A1O43174 497 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 RNF40O75150 1001 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 MTA2O94776 668 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 EDN1P05305 212 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 HARSP12081 509 aaKnown RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 KRT5P13647 590 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 VSNL1P62760 191 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 TRPC3Q13507 836 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 GLE1Q53GS7 698 aaKnown RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 TMEM63BQ5T3F8 832 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 C11orf63Q6NUN7 778 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 MICALCLQ6ZW33 695 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 PEX26Q7Z412 305 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 ZBTB33Q86T24 672 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 TLK2Q86UE8 772 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 CREG2Q8IUH2 290 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 PLCD3Q8N3E9 789 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 MMGT1Q8N4V1 131 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 C1orf131Q8NDD1 294 aaKnown RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 FAM76AQ8TAV0 307 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 SCLT1Q96NL6 688 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 CDT1Q9H211 546 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 ASB7Q9H672 318 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 UVRAGQ9P2Y5 699 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 GTF3C4Q9UKN8 822 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 CNTN6Q9UQ52 1028 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 TMCO5BA8MYB1 307 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 MIF4GDA9UHW6 222 aaKnown RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 KIF4AO95239 1232 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 SGPL1O95470 568 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 VNN1O95497 513 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 ASS1P00966 412 aaKnown RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 RPLP2P05387 115 aaKnown RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 ZNF865P0CJ78 1059 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 GNAT1P11488 350 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 TM4SF4P48230 202 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 DCAF4L1Q3SXM0 396 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 DAAM2Q86T65 1068 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 NOP9Q86U38 636 aaKnown RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 REM2Q8IYK8 340 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-229ENST00000557348 SLC35G2Q8TBE7 412 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 NLRP7Q8WX94 980 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 KAT5Q92993 513 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 TATDN2Q93075 761 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms