RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 BRCC3P46736 316 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 NRIP1P48552 1158 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 GLUD2P49448 558 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 ELAVL2Q12926 359 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 PDCD11Q14690 1871 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 SURF1Q15526 300 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 ZBTB6Q15916 424 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 FAM171A1Q5VUB5 890 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 TAS1R1Q7RTX1 841 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 ADGRD2Q7Z7M1 963 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 C12orf56Q8IXR9 622 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 TMEM130Q8N3G9 435 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 CACTINQ8WUQ7 758 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 B3GALT6Q96L58 329 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 FNBP1Q96RU3 617 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 TSG101Q99816 390 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 HERC2P3Q9BVR0 1158 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 GPR62Q9BZJ7 368 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 ZBP1Q9H171 429 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 MRPL17Q9NRX2 175 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 DPP3Q9NY33 737 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 DERAQ9Y315 318 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 C2CD2Q9Y426 696 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 HIDE1A8MVS5 230 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 PSMA7O14818 248 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 TRAPPC3O43617 180 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 TMEM191BP0C7N4 346 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 DLATP10515 647 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 NR2F2P24468 414 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 IGFBP6P24592 240 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 RPL13P26373 211 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 WNT7BP56706 349 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 USP41Q3LFD5 358 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 SPATA1Q5VX52 437 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 LMBRD2Q68DH5 695 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 KLHL10Q6JEL2 608 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 NT5DC4Q86YG4 428 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 EFCAB13Q8IY85 973 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 MRPL43Q8N983 215 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 C3orf58Q8NDZ4 430 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 GPT2Q8TD30 523 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 RIN2Q8WYP3 895 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 FBXL18Q96ME1 805 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 KIAA1468Q9P260 1216 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 TRAF3IP3Q9Y228 551 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 SSX2IPQ9Y2D8 614 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 FRMD4BQ9Y2L6 1034 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 R3HCC1Q9Y3T6 440 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 ANK1P16157 1881 aa12.4□□□□□ -0.42
CCDC88C-212ENST00000556767 MYO7AQ13402 2215 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 C2orf71A6NGG8 1288 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 TMEM189-UBE2V1I3L0A0 370 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 MBD3O95983 291 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 TNNC2P02585 160 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 KRT19P08727 400 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 TNNI1P19237 187 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 LRPAP1P30533 357 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 GTF2F1P35269 517 aaKnown RBP eCLIP12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 PPP1R2P41236 205 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 CASP4P49662 377 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 CYP24A1Q07973 514 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 HYAL1Q12794 435 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 ADAM9Q13443 819 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 MORC3Q14149 939 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 PTPN14Q15678 1187 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 C9orf57Q5W0N0 161 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 DSTYKQ6XUX3 929 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 SLC9A9Q8IVB4 645 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 ADSSL1Q8N142 457 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 TRIML1Q8N9V2 468 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 ANKRD36BP1Q96IX9 119 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 FAM84AQ96KN4 292 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 TTPALQ9BTX7 342 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 EMILIN2Q9BXX0 1053 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 CLDND1Q9NY35 253 aa12.39□□□□□ -0.43
CCDC88C-212ENST00000556767 TRIM49BA6NDI0 452 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 PPEF2O14830 753 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 CETN3O15182 167 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 CLSTN1O94985 981 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 ITGB3P05106 788 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 CD44P16070 742 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 KLRC2P26717 231 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 POLR2BP30876 1174 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 DSG1Q02413 1049 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 MYBPC2Q14324 1141 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 PSMD6Q15008 389 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 DUOXA2Q1HG44 320 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 COBLL1Q53SF7 1204 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 RTP2Q5QGT7 225 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 LLGL2Q6P1M3 1020 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 PRSS55Q6UWB4 352 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 CD300LGQ6UXG3 332 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 WDR49Q8IV35 697 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 GLYCTKQ8IVS8 523 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 RNF168Q8IYW5 571 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 EEF2KMTQ96G04 330 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 DHTKD1Q96HY7 919 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 MFSD14AQ96MC6 490 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 POP1Q99575 1024 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms