RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 FAM107BQ9H098 131 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 AKT3Q9Y243 479 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 NUB1Q9Y5A7 615 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 CNTNAP2Q9UHC6 1331 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 BTNL10A8MVZ5 291 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 PAX7P23759 505 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 MARCKSL1P49006 195 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 HUNKP57058 714 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 TUBB4BP68371 445 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 TFAMQ00059 246 aaKnown RBP12.51□□□□□ -0.41
SHMT2-212ENST00000554467 MESDQ14696 234 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 ZNF394Q53GI3 561 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 SLFN12LQ6IEE8 588 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 SCARA5Q6ZMJ2 495 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 ZBTB8OSQ8IWT0 167 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 SHCBP1Q8NEM2 672 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 NPLOC4Q8TAT6 608 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 CPB2Q96IY4 423 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 CCDC113Q9H0I3 377 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 ANKRD62A6NC57 917 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 ITGA4P13612 1032 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 CD58P19256 250 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 FGFR4P22455 802 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 IFI16Q16666 785 aaKnown RBP12.51□□□□□ -0.41
SHMT2-212ENST00000554467 C8orf74Q6P047 294 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 TMEM270Q6UE05 265 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 IFT81Q8WYA0 676 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 SELENOOQ9BVL4 669 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 ERAP1Q9NZ08 941 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 TSKSQ9UJT2 592 aa12.51□□□□□ -0.41
SHMT2-212ENST00000554467 A0A087WZ62 844 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 SMPD1P17405 629 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 ANXA13P27216 316 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 ZNF568Q3ZCX4 644 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 MORC4Q8TE76 937 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 CABS1Q96KC9 395 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 RPGRIP1Q96KN7 1286 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 FDXACB1Q9BRP7 624 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-212ENST00000554467 TRIM7Q9C029 511 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 TMEM134Q9H6X4 195 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 DIS3Q9Y2L1 958 aaKnown RBP12.5□□□□□ -0.41
SHMT2-212ENST00000554467 PLXNA1Q9UIW2 1896 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 EIF3HO15372 352 aaKnown RBP eCLIP12.5□□□□□ -0.41
SHMT2-212ENST00000554467 TOM1L1O75674 476 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 C22orf31O95567 290 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 GH1P01241 217 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 PIGRP01833 764 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 ELF1P32519 619 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 GTF2H1P32780 548 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 GRM1Q13255 1194 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 NCOA4Q13772 614 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 MXD4Q14582 209 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-212ENST00000554467 DAB2IPQ5VWQ8 1189 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 ZNF653Q96CK0 615 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 MAML3Q96JK9 1138 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 SCLT1Q96NL6 688 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 KIAA1586Q9HCI6 787 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 PCDHB4Q9Y5E5 795 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 PLXNB2O15031 1838 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 NCANO14594 1321 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 IGKV6-21A0A0C4DH24 114 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 PMM2O15305 246 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 FAM189A1O60320 539 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 HBP1O60381 514 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 GLI1P08151 1106 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 NOP14P78316 857 aaKnown RBP12.5□□□□□ -0.41
SHMT2-212ENST00000554467 DCAF12L1Q5VU92 463 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 MMGT1Q8N4V1 131 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 TCP11Q8WWU5 503 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 DDX1Q92499 740 aaKnown RBP12.5□□□□□ -0.41
SHMT2-212ENST00000554467 KRT35Q92764 455 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 CENPHQ9H3R5 247 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 BCCIPQ9P287 314 aaKnown RBP eCLIP12.5□□□□□ -0.41
SHMT2-212ENST00000554467 AMFRQ9UKV5 643 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 NR2E1Q9Y466 385 aa12.5□□□□□ -0.41
SHMT2-212ENST00000554467 EFNA5P52803 228 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 MYL6P60660 151 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 CDR2Q01850 454 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 ATF7IP2Q5U623 682 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 USP38Q8NB14 1042 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 RUFY1Q96T51 708 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 CGRRF1Q99675 332 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 KATNBL1Q9H079 304 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 DDX47Q9H0S4 455 aaKnown RBP12.49□□□□□ -0.41
SHMT2-212ENST00000554467 ISCUQ9H1K1 167 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 RNF19AQ9NV58 838 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 INTUQ9ULD6 942 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 STXBP5LQ9Y2K9 1186 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 NOC2LQ9Y3T9 749 aaKnown RBP12.49□□□□□ -0.41
SHMT2-212ENST00000554467 A0A0A6YYK5 440 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-212ENST00000554467 PPP1R12AO14974 1030 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-212ENST00000554467 RTN2O75298 545 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 CXCL8P10145 99 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 GPC5P78333 572 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 LAMC2Q13753 1193 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 CDCA2Q69YH5 1023 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-212ENST00000554467 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.49□□□□□ -0.41
SHMT2-212ENST00000554467 SLFN11Q7Z7L1 901 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 ANKRD23Q86SG2 305 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 LMBR1Q8WVP7 490 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms