RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 GPRC5CQ9NQ84 441 aa13□□□□□ -0.33
SRP54-203ENST00000553544 CACNG4Q9UBN1 327 aa13□□□□□ -0.33
SRP54-203ENST00000553544 LRWD1Q9UFC0 647 aa13□□□□□ -0.33
SRP54-203ENST00000553544 ZSCAN21Q9Y5A6 473 aaPredicted RBP13□□□□□ -0.33
SRP54-203ENST00000553544 DOCK6Q96HP0 2047 aa13□□□□□ -0.33
SRP54-203ENST00000553544 CHD6Q8TD26 2715 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 SLC30A4O14863 429 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 LRP3O75074 770 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 KIF4AO95239 1232 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 RETP07949 1114 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 CYP11B2P19099 503 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 PPM1JQ5JR12 505 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 MCTP1Q6DN14 999 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 TANGO2Q6ICL3 276 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 PADI6Q6TGC4 694 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.99□□□□□ -0.33
SRP54-203ENST00000553544 DNASE1L2Q92874 299 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 IER2Q9BTL4 223 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 POLR3FQ9H1D9 316 aaPredicted RBP12.99□□□□□ -0.33
SRP54-203ENST00000553544 LMAN1LQ9HAT1 526 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 AVENQ9NQS1 362 aaPredicted RBP12.99□□□□□ -0.33
SRP54-203ENST00000553544 PRMT7Q9NVM4 692 aaPredicted RBP12.99□□□□□ -0.33
SRP54-203ENST00000553544 NDRG2Q9UN36 371 aaKnown RBP12.99□□□□□ -0.33
SRP54-203ENST00000553544 SMC3Q9UQE7 1217 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 STK24Q9Y6E0 443 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 TRIP11Q15643 1979 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 MYH15Q9Y2K3 1946 aa12.99□□□□□ -0.33
SRP54-203ENST00000553544 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.98□□□□□ -0.33
SRP54-203ENST00000553544 H3BQV1 296 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 RHOP08100 348 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 CCT6AP40227 531 aaKnown RBP12.98□□□□□ -0.33
SRP54-203ENST00000553544 CCR3P51677 355 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 ATP2C1P98194 919 aaPredicted RBP12.98□□□□□ -0.33
SRP54-203ENST00000553544 LPAL2Q16609 132 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 CDCA2Q69YH5 1023 aaPredicted RBP12.98□□□□□ -0.33
SRP54-203ENST00000553544 MAEAQ7L5Y9 396 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 IRF7Q92985 503 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 PRIMPOLQ96LW4 560 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 MMTAG2Q9BU76 263 aaKnown RBP12.98□□□□□ -0.33
SRP54-203ENST00000553544 TRMT61BQ9BVS5 477 aaKnown RBP12.98□□□□□ -0.33
SRP54-203ENST00000553544 RAB34Q9BZG1 259 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 CHRDQ9H2X0 955 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 BRD9Q9H8M2 597 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 ZFP14Q9HCL3 533 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.98□□□□□ -0.33
SRP54-203ENST00000553544 CFAP47Q6ZTR5 3102 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 MAP1BP46821 2468 aaKnown RBP12.98□□□□□ -0.33
SRP54-203ENST00000553544 MIA3Q5JRA6 1907 aa12.98□□□□□ -0.33
SRP54-203ENST00000553544 F5P12259 2224 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 ARHGEF35A5YM69 484 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 SHISA7A6NL88 538 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 PTGESO14684 152 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 ZNF197O14709 1029 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 TRAPPC3O43617 180 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 FOXD2O60548 495 aaPredicted RBP12.97□□□□□ -0.33
SRP54-203ENST00000553544 B3GAT3O94766 335 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 TDGF1P13385 188 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 FGFR3P22607 806 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 ELF1P32519 619 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 SIM2Q14190 667 aaPredicted RBP12.97□□□□□ -0.33
SRP54-203ENST00000553544 FAM187BQ17R55 369 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 TMEM132AQ24JP5 1023 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 LARP1BQ659C4 914 aaKnown RBP12.97□□□□□ -0.33
SRP54-203ENST00000553544 DTHD1Q6ZMT9 781 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 PRR23BQ6ZRT6 265 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 ZNF687Q8N1G0 1237 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 ZNF461Q8TAF7 563 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 SNX29Q8TEQ0 813 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 BSNDQ8WZ55 320 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 DDX1Q92499 740 aaKnown RBP12.97□□□□□ -0.33
SRP54-203ENST00000553544 FAM3CQ92520 227 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 FZD8Q9H461 694 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 SEMA4GQ9NTN9 838 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 DDX19AQ9NUU7 478 aaKnown RBP12.97□□□□□ -0.33
SRP54-203ENST00000553544 SNTG2Q9NY99 539 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 MTRRQ9UBK8 725 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 DAXXQ9UER7 740 aaPredicted RBP12.97□□□□□ -0.33
SRP54-203ENST00000553544 KIAA1024Q9UPX6 916 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 BACE2Q9Y5Z0 518 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 CDY1Q9Y6F8 540 aa12.97□□□□□ -0.33
SRP54-203ENST00000553544 LRRIQ4A6NIV6 560 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 PP2D1A8MPX8 630 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 PRRG1O14668 218 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 N4BP3O15049 544 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 MICAL2O94851 1124 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 LRG1P02750 347 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 CDC25AP30304 524 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 CNR2P34972 360 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 CXCL12P48061 93 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 CSRP2Q16527 193 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 SLC5A9Q2M3M2 681 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 HYIQ5T013 277 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 KRT79Q5XKE5 535 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 ANKS3Q6ZW76 656 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 ZBTB8OSQ8IWT0 167 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 ADPGKQ9BRR6 497 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 BHMT2Q9H2M3 363 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 TRPV5Q9NQA5 729 aa12.96□□□□□ -0.33
SRP54-203ENST00000553544 ARHGEF37A1IGU5 675 aa12.95□□□□□ -0.34
SRP54-203ENST00000553544 E9PMD0 336 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms