RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 DHX8Q14562 1220 aaKnown RBP13.92□□□□□ -0.18
LINC00643-202ENST00000553426 TMEM119Q4V9L6 283 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 PABPC1LQ4VXU2 614 aaKnown RBP13.92□□□□□ -0.18
LINC00643-202ENST00000553426 VARS2Q5ST30 1063 aaKnown RBP13.92□□□□□ -0.18
LINC00643-202ENST00000553426 CWF19L1Q69YN2 538 aaKnown RBP13.92□□□□□ -0.18
LINC00643-202ENST00000553426 GPBP1Q86WP2 473 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 C3orf58Q8NDZ4 430 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 APPL2Q8NEU8 664 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 ZNF461Q8TAF7 563 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 ZBTB45Q96K62 511 aaPredicted RBP13.92□□□□□ -0.18
LINC00643-202ENST00000553426 ZMAT2Q96NC0 199 aaKnown RBP13.92□□□□□ -0.18
LINC00643-202ENST00000553426 PLEKHA5Q9HAU0 1116 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 KCNH3Q9ULD8 1083 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 CA14Q9ULX7 337 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 NUMBLQ9Y6R0 609 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 CACNA1HO95180 2353 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 ABLIM1O14639 778 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 HNRNPDLO14979 420 aaKnown RBP13.91□□□□□ -0.18
LINC00643-202ENST00000553426 XPOTO43592 962 aaKnown RBP13.91□□□□□ -0.18
LINC00643-202ENST00000553426 GFRA3O60609 400 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 CLTAP09496 248 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 LONP1P36776 959 aaKnown RBP13.91□□□□□ -0.18
LINC00643-202ENST00000553426 ARPP19P56211 112 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 PPP2R3AQ06190 1150 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 MCL1Q07820 350 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 SLC8B1Q6J4K2 584 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 ZNF280DQ6N043 979 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 CD300LGQ6UXG3 332 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 HAUS6Q7Z4H7 955 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 ELMOD1Q8N336 334 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 MYCT1Q8N699 235 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 FGF13Q92913 245 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 C18orf25Q96B23 403 aaPredicted RBP13.91□□□□□ -0.18
LINC00643-202ENST00000553426 SHDQ96IW2 340 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 TBC1D32Q96NH3 1257 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 PARVGQ9HBI0 331 aa13.91□□□□□ -0.18
LINC00643-202ENST00000553426 MRPS23Q9Y3D9 190 aaKnown RBP13.91□□□□□ -0.18
LINC00643-202ENST00000553426 NPHP3-ACAD11A0A0J9YXS1 232 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 VPS37CA5D8V6 355 aaPredicted RBP13.9□□□□□ -0.18
LINC00643-202ENST00000553426 K7ENM7 598 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 TBCAO75347 108 aaKnown RBP13.9□□□□□ -0.18
LINC00643-202ENST00000553426 NPR3P17342 541 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 PTPN2P17706 415 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 IGFBP6P24592 240 aaPredicted RBP13.9□□□□□ -0.18
LINC00643-202ENST00000553426 NCKAP1LP55160 1127 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 NTHL1P78549 312 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 ROR1Q01973 937 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 CACNB1Q02641 598 aaPredicted RBP13.9□□□□□ -0.18
LINC00643-202ENST00000553426 SLC10A6Q3KNW5 377 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 CTXN3Q4LDR2 81 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 TPGS2Q68CL5 300 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 RSPO2Q6UXX9 243 aaPredicted RBP13.9□□□□□ -0.18
LINC00643-202ENST00000553426 CCDC105Q8IYK2 499 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 DTWD2Q8NBA8 298 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 GPR152Q8TDT2 470 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 SUSD3Q96L08 255 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 TSPAN18Q96SJ8 248 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 REEP2Q9BRK0 252 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 ZHX3Q9H4I2 956 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 TBC1D17Q9HA65 648 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 ARHGEF3Q9NR81 526 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 SLC2A4RGQ9NR83 387 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 MAFFQ9ULX9 164 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 UBQLN1Q9UMX0 589 aaKnown RBP13.9□□□□□ -0.18
LINC00643-202ENST00000553426 DCHS1Q96JQ0 3298 aa13.9□□□□□ -0.18
LINC00643-202ENST00000553426 PI15O43692 258 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 TRAK2O60296 914 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 ABLIM3O94929 683 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 CXCL8P10145 99 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 ATF2P15336 505 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 CYP3A5P20815 502 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 PFKPQ01813 784 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 SF3A1Q15459 793 aaKnown RBP13.89□□□□□ -0.19
LINC00643-202ENST00000553426 SEZ6Q53EL9 994 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 ARSHQ5FYA8 562 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 PHLDB3Q6NSJ2 640 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 PARM1Q6UWI2 310 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 USP37Q86T82 979 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 TCEAL8Q8IYN2 117 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 LARP4BQ92615 738 aaKnown RBP13.89□□□□□ -0.19
LINC00643-202ENST00000553426 FGF14Q92915 247 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 KIF12Q96FN5 646 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 OXCT2Q9BYC2 517 aaPredicted RBP13.89□□□□□ -0.19
LINC00643-202ENST00000553426 RPF1Q9H9Y2 349 aaKnown RBP13.89□□□□□ -0.19
LINC00643-202ENST00000553426 CYP4F11Q9HBI6 524 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 HCFC1R1Q9NWW0 138 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 GDE1Q9NZC3 331 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 DNMT3BQ9UBC3 853 aaKnown RBP13.89□□□□□ -0.19
LINC00643-202ENST00000553426 CCDC39Q9UFE4 941 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 TBX20Q9UMR3 447 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 TRIP11Q15643 1979 aa13.89□□□□□ -0.19
LINC00643-202ENST00000553426 ZFHX2Q9C0A1 2572 aaPredicted RBP13.88□□□□□ -0.19
LINC00643-202ENST00000553426 VWA8A3KMH1 1905 aa13.88□□□□□ -0.19
LINC00643-202ENST00000553426 DOCK8Q8NF50 2099 aa13.88□□□□□ -0.19
LINC00643-202ENST00000553426 ARHGEF37A1IGU5 675 aa13.88□□□□□ -0.19
LINC00643-202ENST00000553426 WDR27A2RRH5 827 aa13.88□□□□□ -0.19
LINC00643-202ENST00000553426 KRBA1A5PL33 1030 aa13.88□□□□□ -0.19
LINC00643-202ENST00000553426 PROB1E7EW31 1015 aa13.88□□□□□ -0.19
LINC00643-202ENST00000553426 ZNF197O14709 1029 aa13.88□□□□□ -0.19
LINC00643-202ENST00000553426 CPB1P15086 417 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms