RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 ZBTB6Q15916 424 aa16.68■□□□□ 0.26
SHMT2-204ENST00000553324 ENOX2Q16206 610 aaKnown RBP16.68■□□□□ 0.26
SHMT2-204ENST00000553324 CYP26C1Q6V0L0 522 aa16.68■□□□□ 0.26
SHMT2-204ENST00000553324 ANKS3Q6ZW76 656 aa16.68■□□□□ 0.26
SHMT2-204ENST00000553324 LNX1Q8TBB1 728 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-204ENST00000553324 FAM212AQ96EL1 285 aa16.68■□□□□ 0.26
SHMT2-204ENST00000553324 SFXN1Q9H9B4 322 aa16.68■□□□□ 0.26
SHMT2-204ENST00000553324 GOLGA2P5Q9HBQ8 144 aa16.68■□□□□ 0.26
SHMT2-204ENST00000553324 MYH11P35749 1972 aa16.68■□□□□ 0.26
SHMT2-204ENST00000553324 A0A1W2PQ27 194 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 A0A1W2PQ64 194 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 A0A1W2PQD8 194 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 SYN3O14994 580 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 EIF3DO15371 548 aaKnown RBP eCLIP16.67■□□□□ 0.26
SHMT2-204ENST00000553324 MEFVO15553 781 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-204ENST00000553324 MYBP10242 640 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 ADSSP30520 456 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 LRPAP1P30533 357 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 ACOT2P49753 483 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 RTP2Q5QGT7 225 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 C15orf39Q6ZRI6 1047 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 NT5DC4Q86YG4 428 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 BEST2Q8NFU1 509 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 C18orf25Q96B23 403 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-204ENST00000553324 CCDC34Q96HJ3 373 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 B3GALT6Q96L58 329 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 CUL9Q8IWT3 2517 aa16.67■□□□□ 0.26
SHMT2-204ENST00000553324 TDRD15B5MCY1 1934 aaKnown RBP16.66■□□□□ 0.26
SHMT2-204ENST00000553324 FAM237AA0A1B0GTK4 181 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 A0A1B0GVL5 298 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 PRPF6O94906 941 aaKnown RBP16.66■□□□□ 0.26
SHMT2-204ENST00000553324 IL18RAPO95256 599 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 PFKFB1P16118 471 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 SYKP43405 635 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 AFMP43652 599 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 CASP5P51878 434 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 SNRPFP62306 86 aaKnown RBP16.66■□□□□ 0.26
SHMT2-204ENST00000553324 KCNA1Q09470 495 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 PSMD5Q16401 504 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 FAM26FQ5R3K3 315 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 ZBTB41Q5SVQ8 909 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 SPATA1Q5VX52 437 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 CD300LGQ6UXG3 332 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 RTL10Q7L3V2 364 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 PALB2Q86YC2 1186 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 APPL2Q8NEU8 664 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 CMASQ8NFW8 434 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-204ENST00000553324 ZNF507Q8TCN5 953 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 MAN1C1Q9NR34 630 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 SERTAD1Q9UHV2 236 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 HPSEQ9Y251 543 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 C2CD2Q9Y426 696 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 NR2E1Q9Y466 385 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 BACE2Q9Y5Z0 518 aa16.66■□□□□ 0.26
SHMT2-204ENST00000553324 ATG2AQ2TAZ0 1938 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 H7C4K7 107 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 TGM5O43548 720 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 ALADP13716 330 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 PSMD2Q13200 908 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 RARS2Q5T160 578 aaKnown RBP16.65■□□□□ 0.26
SHMT2-204ENST00000553324 LILRA6Q6PI73 481 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 PRSS55Q6UWB4 352 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-204ENST00000553324 GPR149Q86SP6 731 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 C3orf58Q8NDZ4 430 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 PAGE5Q96GU1 130 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 SUSD3Q96L08 255 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 CLSTN3Q9BQT9 956 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 APOL5Q9BWW9 433 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 OXCT2Q9BYC2 517 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-204ENST00000553324 RHOBTB2Q9BYZ6 727 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 KIAA1586Q9HCI6 787 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 MTRRQ9UBK8 725 aa16.65■□□□□ 0.26
SHMT2-204ENST00000553324 TCF20Q9UGU0 1960 aaKnown RBP16.65■□□□□ 0.26
SHMT2-204ENST00000553324 ARHGEF37A1IGU5 675 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 GOLGA6L4A6NEF3 574 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 LOC730098B7Z3J9 87 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 TISP43B9A030 160 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 ACTN4O43707 911 aaKnown RBP16.64■□□□□ 0.25
SHMT2-204ENST00000553324 EXTL3O43909 919 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 MCM4P33991 863 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 BRCC3P46736 316 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 SPAG1Q07617 926 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 CUL4BQ13620 913 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 RAB33AQ14088 237 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 TMEM132DQ14C87 1099 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 JADE1Q6IE81 842 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 ARMCX5Q6P1M9 558 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 TMC5Q6UXY8 1006 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 C12orf76Q8N812 135 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-204ENST00000553324 FAM213AQ9BRX8 229 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 BLZF1Q9H2G9 400 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 CD320Q9NPF0 282 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 ZDHHC7Q9NXF8 308 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 CGNQ9P2M7 1197 aaKnown RBP16.64■□□□□ 0.25
SHMT2-204ENST00000553324 TUBGCP4Q9UGJ1 667 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 UBE4BO95155 1302 aa16.64■□□□□ 0.25
SHMT2-204ENST00000553324 MYH15Q9Y2K3 1946 aa16.63■□□□□ 0.25
SHMT2-204ENST00000553324 NCOR1O75376 2440 aa16.63■□□□□ 0.25
SHMT2-204ENST00000553324 CCDC195A0A1B0GUA6 201 aa16.63■□□□□ 0.25
SHMT2-204ENST00000553324 PI4K2BG5E9Z4 385 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms