RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.31■□□□□ 0.04
PTCH1-226ENST00000553011 ZNF233A6NK53 670 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 I3L4J1 428 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 C2CD2LO14523 706 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 PPEF2O14830 753 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 CYP3A5P20815 502 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 LRPAP1P30533 357 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 RPL9P32969 192 aaKnown RBP15.31■□□□□ 0.04
PTCH1-226ENST00000553011 BRCC3P46736 316 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 PTPN14Q15678 1187 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 CAMK4Q16566 473 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 SPATA1Q5VX52 437 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 C12orf56Q8IXR9 622 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 MRPL43Q8N983 215 aaKnown RBP15.31■□□□□ 0.04
PTCH1-226ENST00000553011 XXYLT1Q8NBI6 393 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 GOLGA5Q8TBA6 731 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 PPP2R3CQ969Q6 453 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 FBXL18Q96ME1 805 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 TSPAN18Q96SJ8 248 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 TLE6Q9H808 572 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 PDE11AQ9HCR9 933 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 MAN1B1Q9UKM7 699 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 DERAQ9Y315 318 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 C2CD2Q9Y426 696 aa15.31■□□□□ 0.04
PTCH1-226ENST00000553011 SF3B1O75533 1304 aaKnown RBP eCLIP15.31■□□□□ 0.044e-7■■■■■ 133.7
PTCH1-226ENST00000553011 MTCL1Q9Y4B5 1905 aaKnown RBP15.31■□□□□ 0.04
PTCH1-226ENST00000553011 PDXKO00764 312 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 LINC01565O15544 149 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 XPOTO43592 962 aaKnown RBP15.3■□□□□ 0.04
PTCH1-226ENST00000553011 EXOC3O60645 756 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 KIF20AO95235 890 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 URODP06132 367 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 PRCPP42785 496 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 GLUD2P49448 558 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 RBM10P98175 930 aaKnown RBP15.3■□□□□ 0.04
PTCH1-226ENST00000553011 BMS1Q14692 1282 aaKnown RBP15.3■□□□□ 0.04
PTCH1-226ENST00000553011 SNRNP35Q16560 246 aaKnown RBP15.3■□□□□ 0.04
PTCH1-226ENST00000553011 DUSP6Q16828 381 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 USP41Q3LFD5 358 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 ZNF658Q5TYW1 1059 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-226ENST00000553011 FAM171A1Q5VUB5 890 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 KIAA0319Q5VV43 1072 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 BEST2Q8NFU1 509 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 KIAA1586Q9HCI6 787 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 CHST7Q9NS84 486 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 DMAC2Q9NW81 257 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 STK39Q9UEW8 545 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 TCF20Q9UGU0 1960 aaKnown RBP15.3■□□□□ 0.04
PTCH1-226ENST00000553011 IRAK3Q9Y616 596 aa15.3■□□□□ 0.04
PTCH1-226ENST00000553011 PTPRJQ12913 1337 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 BIN1O00499 593 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 LILRB3O75022 631 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 NR3C1P04150 777 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 TFAMQ00059 246 aaKnown RBP15.29■□□□□ 0.04
PTCH1-226ENST00000553011 DSG1Q02413 1049 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 COL19A1Q14993 1142 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 RTP2Q5QGT7 225 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 LMBRD2Q68DH5 695 aaPredicted RBP15.29■□□□□ 0.04
PTCH1-226ENST00000553011 KIAA1841Q6NSI8 718 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 EP400NLQ6ZTU2 488 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 CEP57Q86XR8 500 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 SLC9A9Q8IVB4 645 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 RIN2Q8WYP3 895 aaPredicted RBP15.29■□□□□ 0.04
PTCH1-226ENST00000553011 PABPC5Q96DU9 382 aaKnown RBP15.29■□□□□ 0.04
PTCH1-226ENST00000553011 MRPL17Q9NRX2 175 aaKnown RBP15.29■□□□□ 0.04
PTCH1-226ENST00000553011 DPP3Q9NY33 737 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 CLDND1Q9NY35 253 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 TRAF3IP3Q9Y228 551 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 NUB1Q9Y5A7 615 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 TSC2P49815 1807 aa15.29■□□□□ 0.04
PTCH1-226ENST00000553011 CALUO43852 315 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-226ENST00000553011 CLASP2O75122 1294 aaKnown RBP15.28■□□□□ 0.04
PTCH1-226ENST00000553011 GLP2RO95838 553 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 CNPP09543 421 aaKnown RBP15.28■□□□□ 0.04
PTCH1-226ENST00000553011 BMP6P22004 513 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 MCM4P33991 863 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 CASP4P49662 377 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 TFF2Q03403 129 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 CYP24A1Q07973 514 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 ELAVL2Q12926 359 aaKnown RBP15.28■□□□□ 0.04
PTCH1-226ENST00000553011 ADAM15Q13444 863 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 CTC1Q2NKJ3 1217 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 ZCWPW2Q504Y3 356 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 C9orf57Q5W0N0 161 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 PRSS55Q6UWB4 352 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-226ENST00000553011 EFHBQ8N7U6 833 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 VN1R2Q8NFZ6 395 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 HLA-CQ95604 372 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 KLHL5Q96PQ7 755 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 CDCA3Q99618 268 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-226ENST00000553011 TTPALQ9BTX7 342 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 CLSTN2Q9H4D0 955 aa15.28■□□□□ 0.04
PTCH1-226ENST00000553011 UBE2ZQ9H832 354 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-226ENST00000553011 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-226ENST00000553011 TTC28Q96AY4 2481 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-226ENST00000553011 ANO9A1A5B4 782 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 GOLGA6L22H0YM25 854 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 TRAPPC3O43617 180 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 CD44P16070 742 aaKnown RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms