RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 STX17P56962 302 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 ENPEPQ07075 957 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 GRIN2CQ14957 1233 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 STX1AQ16623 288 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 UPP1Q16831 310 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 PDE12Q6L8Q7 609 aaKnown RBP14.9□□□□□ -0.02
PTCH1-213ENST00000546820 TTI2Q6NXR4 508 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 FILIP1Q7Z7B0 1213 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 DDX53Q86TM3 631 aaKnown RBP14.9□□□□□ -0.02
PTCH1-213ENST00000546820 WDR49Q8IV35 697 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 CSGALNACT2Q8N6G5 542 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 SPPL3Q8TCT6 385 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 TMC2Q8TDI7 906 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 PRDM12Q9H4Q4 367 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 METTL14Q9HCE5 456 aaKnown RBP14.9□□□□□ -0.02
PTCH1-213ENST00000546820 ALG13Q9NP73 1137 aaKnown RBP14.9□□□□□ -0.02
PTCH1-213ENST00000546820 LMCD1Q9NZU5 365 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 ADAM28Q9UKQ2 775 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 RALGAPA2Q2PPJ7 1873 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 TRIM49BA6NDI0 452 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 TMEM189-UBE2V1I3L0A0 370 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 PODXLO00592 558 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 IKBKBO14920 756 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 STX10O60499 249 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 B4GALT3O60512 393 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 AKAP3O75969 853 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 LRPAP1P30533 357 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 VAMP7P51809 220 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 SOX4Q06945 474 aaPredicted RBP14.89□□□□□ -0.03
PTCH1-213ENST00000546820 ELAVL2Q12926 359 aaKnown RBP14.89□□□□□ -0.03
PTCH1-213ENST00000546820 DPCR1Q3MIW9 517 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 SPRED2Q7Z698 418 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 ZC3H3Q8IXZ2 948 aaKnown RBP14.89□□□□□ -0.03
PTCH1-213ENST00000546820 MICAL1Q8TDZ2 1067 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 PARD3BQ8TEW8 1205 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 POF1BQ8WVV4 589 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 CGRRF1Q99675 332 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 NAT10Q9H0A0 1025 aaKnown RBP14.89□□□□□ -0.03
PTCH1-213ENST00000546820 GOLGA2P5Q9HBQ8 144 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 INTS13Q9NVM9 706 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 TUBGCP4Q9UGJ1 667 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 NUB1Q9Y5A7 615 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 NLRC5Q86WI3 1866 aa14.89□□□□□ -0.03
PTCH1-213ENST00000546820 RFXAPO00287 272 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 GRM6O15303 877 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 LPXNO60711 386 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 CCDC192P0DO97 292 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 RBP5P82980 135 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 KIAA1841Q6NSI8 718 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 Q7L0L9 218 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 TMC7Q7Z402 723 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 FRMD5Q7Z6J6 570 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 EFCAB13Q8IY85 973 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 GDPD5Q8WTR4 605 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 RABGGTAQ92696 567 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 EEF2KMTQ96G04 330 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 DUSP9Q99956 384 aaKnown RBP14.88□□□□□ -0.03
PTCH1-213ENST00000546820 PAAF1Q9BRP4 392 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 SRRTQ9BXP5 876 aaKnown RBP14.88□□□□□ -0.03
PTCH1-213ENST00000546820 TLR9Q9NR96 1032 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 ARMCX3Q9UH62 379 aaPredicted RBP14.88□□□□□ -0.03
PTCH1-213ENST00000546820 ITGA11Q9UKX5 1188 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 SSX2IPQ9Y2D8 614 aa14.88□□□□□ -0.03
PTCH1-213ENST00000546820 SF3B1O75533 1304 aaKnown RBP eCLIP14.88□□□□□ -0.034e-7■■■■■ 133.7
PTCH1-213ENST00000546820 EPOPA6NHQ4 379 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 PHACTR2O75167 634 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 IGFBP4P22692 258 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 PNPLA4P41247 253 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 CLDN10P78369 228 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 TYRO3Q06418 890 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 BFSP1Q12934 665 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 CCDC40Q4G0X9 1142 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 C9orf57Q5W0N0 161 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 FUT10Q6P4F1 479 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 VPS52Q8N1B4 723 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 PPP2R3CQ969Q6 453 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 MRPL38Q96DV4 380 aaKnown RBP14.87□□□□□ -0.03
PTCH1-213ENST00000546820 POP1Q99575 1024 aaKnown RBP14.87□□□□□ -0.03
PTCH1-213ENST00000546820 CDX2Q99626 313 aaPredicted RBP14.87□□□□□ -0.03
PTCH1-213ENST00000546820 NGRNQ9NPE2 291 aaKnown RBP14.87□□□□□ -0.03
PTCH1-213ENST00000546820 MTMR10Q9NXD2 777 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 MYO9BQ13459 2157 aa14.87□□□□□ -0.03
PTCH1-213ENST00000546820 ANO9A1A5B4 782 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 ARHGEF37A1IGU5 675 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 PIRO00625 290 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 KIF4AO95239 1232 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 CXCL14O95715 111 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 SOD2P04179 222 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 KRT19P08727 400 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 POU3F3P20264 500 aaPredicted RBP14.86□□□□□ -0.03
PTCH1-213ENST00000546820 GTF2H1P32780 548 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 GUCY2FP51841 1108 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 WNT7BP56706 349 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 MYO1EQ12965 1108 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 TRPC3Q13507 836 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 USP41Q3LFD5 358 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 TRAPPC11Q7Z392 1133 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 TMEM173Q86WV6 379 aaPredicted RBP14.86□□□□□ -0.03
PTCH1-213ENST00000546820 FAM114A1Q8IWE2 563 aa14.86□□□□□ -0.03
PTCH1-213ENST00000546820 C1orf127Q8N9H9 656 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms