RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SIM2Q14190 667 aaPredicted RBP14.08□□□□□ -0.16
SCAF11-208ENST00000546534 CD300LGQ6UXG3 332 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 MAP4K3Q8IVH8 894 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 FAM3CQ92520 227 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 TCEAL4Q96EI5 215 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 PRIMPOLQ96LW4 560 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 FZD8Q9H461 694 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 PDZD7Q9H5P4 517 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 ZFP14Q9HCL3 533 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 GPRC5CQ9NQ84 441 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 RALYQ9UKM9 306 aaKnown RBP14.08□□□□□ -0.16
SCAF11-208ENST00000546534 BACE2Q9Y5Z0 518 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 ARHGEF37A1IGU5 675 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 CHURC1-FNTBB4DL54 471 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 TMEM189-UBE2V1I3L0A0 370 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 I3L4J1 428 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 USO1O60763 962 aaKnown RBP14.07□□□□□ -0.16
SCAF11-208ENST00000546534 B3GAT3O94766 335 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 BAG4O95429 457 aaKnown RBP14.07□□□□□ -0.16
SCAF11-208ENST00000546534 LRG1P02750 347 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 PSMA5P28066 241 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 CXCL12P48061 93 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 FNTBP49356 437 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 RARRES1P49788 294 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 DMWDQ09019 674 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 GAS6Q14393 721 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 FAM187BQ17R55 369 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 PRSS36Q5K4E3 855 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 PIK3AP1Q6ZUJ8 805 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 ANKS3Q6ZW76 656 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 MAEAQ7L5Y9 396 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 NOSTRINQ8IVI9 506 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 SLFN12Q8IYM2 578 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 OXER1Q8TDS5 423 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 PIGOQ8TEQ8 1089 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 PTCD2Q8WV60 388 aaKnown RBP14.07□□□□□ -0.16
SCAF11-208ENST00000546534 IRF7Q92985 503 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 NAP1L4Q99733 375 aaKnown RBP14.07□□□□□ -0.16
SCAF11-208ENST00000546534 CORO1BQ9BR76 489 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 ZNF334Q9HCZ1 680 aaPredicted RBP14.07□□□□□ -0.16
SCAF11-208ENST00000546534 PRMT7Q9NVM4 692 aaPredicted RBP14.07□□□□□ -0.16
SCAF11-208ENST00000546534 ANGPTL2Q9UKU9 493 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 USP20Q9Y2K6 914 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 PIAS3Q9Y6X2 628 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 VWA8A3KMH1 1905 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 F5P12259 2224 aa14.07□□□□□ -0.16
SCAF11-208ENST00000546534 N4BP3O15049 544 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 CHRNB1P11230 501 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 GDI1P31150 447 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 CCR2P41597 374 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 BRCC3P46736 316 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 CLCNKBP51801 687 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 ROR1Q01973 937 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 EARS2Q5JPH6 523 aaKnown RBP14.06□□□□□ -0.16
SCAF11-208ENST00000546534 CDCA2Q69YH5 1023 aaPredicted RBP14.06□□□□□ -0.16
SCAF11-208ENST00000546534 VITQ6UXI7 678 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.06□□□□□ -0.16
SCAF11-208ENST00000546534 ZNF461Q8TAF7 563 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 ZSWIM3Q96MP5 696 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 CCDC43Q96MW1 224 aaKnown RBP14.06□□□□□ -0.16
SCAF11-208ENST00000546534 ASB16Q96NS5 453 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 TRPV5Q9NQA5 729 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 GDAQ9Y2T3 454 aa14.06□□□□□ -0.16
SCAF11-208ENST00000546534 WDR27A2RRH5 827 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 FAM205CA6NFA0 338 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 PRRG1O14668 218 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 ABLIM3O94929 683 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 PSMC3P17980 439 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 ELF1P32519 619 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 VIPR2P41587 438 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 RBM25P49756 843 aaKnown RBP14.05□□□□□ -0.16
SCAF11-208ENST00000546534 STK3Q13188 491 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 PRPF4BQ13523 1007 aaKnown RBP14.05□□□□□ -0.16
SCAF11-208ENST00000546534 TMEM132AQ24JP5 1023 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 GLRA4Q5JXX5 417 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 EEF1DP3Q658K8 133 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 SLC8B1Q6J4K2 584 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 ZBTB8OSQ8IWT0 167 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 SPEM1Q8N4L4 309 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 C3orf58Q8NDZ4 430 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 SMARCD2Q92925 531 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 ZNF274Q96GC6 653 aaPredicted RBP14.05□□□□□ -0.16
SCAF11-208ENST00000546534 PPP1R10Q96QC0 940 aaKnown RBP14.05□□□□□ -0.16
SCAF11-208ENST00000546534 GOLGA2P5Q9HBQ8 144 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 GJB4Q9NTQ9 266 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 PCDHA12Q9UN75 941 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 CFAP47Q6ZTR5 3102 aa14.05□□□□□ -0.16
SCAF11-208ENST00000546534 COL4A2P08572 1712 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 ZNF197O14709 1029 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 TRAPPC3O43617 180 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 MICAL2O94851 1124 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 SEC24AO95486 1093 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 EDN1P05305 212 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 LIG1P18858 919 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 CCNE1P24864 410 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 PMLP29590 882 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 CNR2P34972 360 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 ARPP19P56211 112 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 UPP1Q16831 310 aa14.04□□□□□ -0.16
SCAF11-208ENST00000546534 N4BP2L1Q5TBK1 243 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms