RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TOM1L1O75674 476 aa16.61■□□□□ 0.25
CUX1-211ENST00000546411 ITGB5P18084 799 aa16.61■□□□□ 0.25
CUX1-211ENST00000546411 CDR2Q01850 454 aa16.61■□□□□ 0.25
CUX1-211ENST00000546411 MMP19Q99542 508 aa16.61■□□□□ 0.25
CUX1-211ENST00000546411 SEMA4AQ9H3S1 761 aa16.61■□□□□ 0.25
CUX1-211ENST00000546411 EIF4E1BA6NMX2 242 aaKnown RBP16.6■□□□□ 0.25
CUX1-211ENST00000546411 TXNDC9O14530 226 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 ADORA2BP29275 332 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 SPARCL1Q14515 664 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 CCHCR1Q8TD31 782 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 SLC5A5Q92911 643 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 KIF12Q96FN5 646 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 ZBTB45Q96K62 511 aaPredicted RBP16.6■□□□□ 0.25
CUX1-211ENST00000546411 MTMR12Q9C0I1 747 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 NACA2Q9H009 215 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 PXMP2Q9NR77 195 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 PSMD10O75832 226 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 GJB6O95452 261 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 TTLL4Q14679 1199 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 PGM5Q15124 567 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 NXNQ6DKJ4 435 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 MORC4Q8TE76 937 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 RGPD5Q99666 1765 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 ANKRD63C9JTQ0 380 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 SPDYE2Q495Y8 402 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 PHLDB3Q6NSJ2 640 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 DCLK2Q8N568 766 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 SLC13A1Q9BZW2 595 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 FAM49BQ9NUQ9 324 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 SNX9Q9Y5X1 595 aa16.6■□□□□ 0.25
CUX1-211ENST00000546411 ATP9AO75110 1047 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 TCF7P36402 384 aaPredicted RBP16.59■□□□□ 0.25
CUX1-211ENST00000546411 PTGISQ16647 500 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 ACAD10Q6JQN1 1059 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 NT5DC3Q86UY8 548 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 ACTRT1Q8TDG2 376 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 SCYL1Q96KG9 808 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 XPO6Q96QU8 1125 aaKnown RBP16.59■□□□□ 0.25
CUX1-211ENST00000546411 SENP7Q9BQF6 1050 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 TIPINQ9BVW5 301 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 GANQ9H2C0 597 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 ACTR5Q9H9F9 607 aaPredicted RBP16.59■□□□□ 0.25
CUX1-211ENST00000546411 DISP2A7MBM2 1401 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 PJA2O43164 708 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 TGFB1I1O43294 461 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 SDC4P31431 198 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 SLC12A2P55011 1212 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 BCAR1P56945 870 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 MAP7D1Q3KQU3 841 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 TRIM72Q6ZMU5 477 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 UBA3Q8TBC4 463 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 PRPF31Q8WWY3 499 aaKnown RBP16.59■□□□□ 0.25
CUX1-211ENST00000546411 DHX35Q9H5Z1 703 aaKnown RBP16.59■□□□□ 0.25
CUX1-211ENST00000546411 SLC5A4Q9NY91 659 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 TMEM120BA0PK00 339 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 EXTL3O43909 919 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 PYGMP11217 842 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 CLCN3P51790 818 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 CNTN2Q02246 1040 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 PCGF5Q86SE9 256 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 RUBCNQ92622 972 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 DNAJC18Q9H819 358 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 FGFR1OP2Q9NVK5 253 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 LCMT1Q9UIC8 334 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 SNHG28P0DPA3 235 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 KITP10721 976 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 EFNA5P52803 228 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 PPATQ06203 517 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 MUM1Q2TAK8 710 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 PPP1R2P3Q6NXS1 205 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 AENQ8WTP8 325 aaKnown RBP16.59■□□□□ 0.25
CUX1-211ENST00000546411 HSD17B14Q9BPX1 270 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 STRIP2Q9ULQ0 834 aa16.59■□□□□ 0.25
CUX1-211ENST00000546411 P4HA2O15460 535 aa16.58■□□□□ 0.25
CUX1-211ENST00000546411 OATP04181 439 aa16.58■□□□□ 0.25
CUX1-211ENST00000546411 MYBL1P10243 752 aa16.58■□□□□ 0.25
CUX1-211ENST00000546411 SIX6OS1Q8N1H7 587 aa16.58■□□□□ 0.25
CUX1-211ENST00000546411 PPP4R1Q8TF05 950 aa16.58■□□□□ 0.25
CUX1-211ENST00000546411 CDKL2Q92772 493 aa16.58■□□□□ 0.25
CUX1-211ENST00000546411 CCDC97Q96F63 343 aaPredicted RBP16.58■□□□□ 0.25
CUX1-211ENST00000546411 TRAIPQ9BWF2 469 aa16.58■□□□□ 0.25
CUX1-211ENST00000546411 PABPC3Q9H361 631 aaKnown RBP16.58■□□□□ 0.25
CUX1-211ENST00000546411 NEU2Q9Y3R4 380 aa16.58■□□□□ 0.25
CUX1-211ENST00000546411 PCDHGC5Q9Y5F6 944 aa16.58■□□□□ 0.25
CUX1-211ENST00000546411 C19orf81C9J6K1 198 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 CREB3O43889 395 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 CST8O60676 142 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 PDGFRBP09619 1106 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 PDGFRAP16234 1089 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 PCNX4Q63HM2 1172 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 TWF2Q6IBS0 349 aaKnown RBP16.58■□□□□ 0.24
CUX1-211ENST00000546411 SH3BP5LQ7L8J4 393 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 EXOC8Q8IYI6 725 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 MYCBPAPQ8TBZ2 947 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 SEC16BQ96JE7 1060 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 RAB3IPQ96QF0 476 aaPredicted RBP16.58■□□□□ 0.24
CUX1-211ENST00000546411 ASNSD1Q9NWL6 643 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 FRMPD4Q14CM0 1322 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 GTPBP10A4D1E9 387 aaKnown RBP16.58■□□□□ 0.24
CUX1-211ENST00000546411 MYCP01106 439 aaPredicted RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms