RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 SLC7A3Q8WY07 619 aa17.11■□□□□ 0.33
CLSTN3-216ENST00000545663 CCDC51Q96ER9 411 aa17.11■□□□□ 0.33
CLSTN3-216ENST00000545663 MSANTD3Q96H12 275 aa17.11■□□□□ 0.33
CLSTN3-216ENST00000545663 TMEM87BQ96K49 555 aa17.11■□□□□ 0.33
CLSTN3-216ENST00000545663 JPH2Q9BR39 696 aaPredicted RBP17.11■□□□□ 0.33
CLSTN3-216ENST00000545663 FAM221BA6H8Z2 402 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 INO80B-WBP1J3KQ70 363 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 PTGESO14684 152 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 CHADO15335 359 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 TKTP29401 623 aaKnown RBP17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 AXLP30530 894 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 MCM5P33992 734 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 TNK2Q07912 1038 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 HDAC1Q13547 482 aaPredicted RBP17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 TEAD2Q15562 447 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 ELF2Q15723 593 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 NAB2Q15742 525 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 CYP4A22Q5TCH4 519 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 C1orf228Q6PIY5 440 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 B3GNT9Q6UX72 402 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 FERMT3Q86UX7 667 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 SYNPOQ8N3V7 929 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 HHIPQ96QV1 700 aa17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 DHX33Q9H6R0 707 aaKnown RBP17.1■□□□□ 0.33
CLSTN3-216ENST00000545663 RHOBTB1O94844 696 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 ARPP19P56211 112 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 FAM193AP78312 1265 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 ROR1Q01973 937 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 FCHO2Q0JRZ9 810 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 CD300LGQ6UXG3 332 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 HACE1Q8IYU2 909 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 REXO1Q8N1G1 1221 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 ZNF461Q8TAF7 563 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 CEP170P1Q96L14 293 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 MTA3Q9BTC8 594 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 CYP4F11Q9HBI6 524 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 CEP72Q9P209 647 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 BACE2Q9Y5Z0 518 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 PCNX2A6NKB5 2137 aa17.09■□□□□ 0.33
CLSTN3-216ENST00000545663 ABLIM3O94929 683 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 NEFLP07196 543 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 ELF1P32519 619 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 PTENP60484 403 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 MBTD1Q05BQ5 628 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 ELAVL2Q12926 359 aaKnown RBP17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 CHD1LQ86WJ1 897 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 RDM1Q8NG50 284 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 DDX27Q96GQ7 796 aaKnown RBP17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 SLITRK6Q9H5Y7 841 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 WRAP73Q9P2S5 460 aaPredicted RBP17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 RAXQ9Y2V3 346 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 INSL5Q9Y5Q6 135 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 ZNF462Q96JM2 2506 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 APC2O95996 2303 aa17.08■□□□□ 0.32
CLSTN3-216ENST00000545663 hCG_1984214I3L0E3 225 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 GBP1P32455 592 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 MAPK8P45983 427 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 PSMC5P62195 406 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 NCBP1Q09161 790 aaKnown RBP17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 STXBP5Q5T5C0 1151 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 ZNF713Q8N859 430 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 SHKBP1Q8TBC3 707 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 CRELD1Q96HD1 420 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 ZMYND12Q9H0C1 365 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 SLC32A1Q9H598 525 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 BRPF3Q9ULD4 1205 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 RBM8AQ9Y5S9 174 aaKnown RBP17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 ATG2BQ96BY7 2078 aa17.07■□□□□ 0.32
CLSTN3-216ENST00000545663 ABCA7Q8IZY2 2146 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 EML1O00423 815 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 ZBTB39O15060 712 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 PRKCBP05771 671 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 C19orf57Q0VDD7 668 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 EMC2Q15006 297 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 RTN1Q16799 776 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 LARP1BQ659C4 914 aaKnown RBP17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 FSTL4Q6MZW2 842 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 SLC27A1Q6PCB7 646 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 PIP4P1Q86T03 277 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 SGMS1Q86VZ5 419 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 TCEAL8Q8IYN2 117 aa17.06■□□□□ 0.32
CLSTN3-216ENST00000545663 ASAP2O43150 1006 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 C1QL1O75973 258 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 B3GAT3O94766 335 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 THP07101 528 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 ATF2P15336 505 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 BRCC3P46736 316 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 PFKFB3Q16875 520 aaPredicted RBP17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 SLC8B1Q6J4K2 584 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 APOA5Q6Q788 366 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 CAMKK1Q8N5S9 505 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 MDM1Q8TC05 714 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 ZNF512Q96ME7 567 aaPredicted RBP17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 TMEM209Q96SK2 561 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 FBRSL1Q9HCM7 1045 aaKnown RBP17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 C6orf50Q9HD87 102 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 RBM28Q9NW13 759 aaKnown RBP17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 ACACAQ13085 2346 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 MYO18BQ8IUG5 2567 aa17.05■□□□□ 0.32
CLSTN3-216ENST00000545663 A0A1B0GUA9 196 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms