RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CNKSR1Q969H4 720 aa16.02■□□□□ 0.15
USP28-214ENST00000545540 TACO1Q9BSH4 297 aaKnown RBP16.02■□□□□ 0.15
USP28-214ENST00000545540 RPAP3Q9H6T3 665 aaPredicted RBP16.02■□□□□ 0.15
USP28-214ENST00000545540 C1orf112Q9NSG2 853 aa16.02■□□□□ 0.15
USP28-214ENST00000545540 LRRC37AA6NMS7 1700 aa16.02■□□□□ 0.15
USP28-214ENST00000545540 LRRIQ4A6NIV6 560 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 WDR64B1ANS9 1081 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 IVDP26440 423 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 PIK3CAP42336 1068 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 NRLP54845 237 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 ELF3P78545 371 aaPredicted RBP16.01■□□□□ 0.15
USP28-214ENST00000545540 GAD2Q05329 585 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 SLMAPQ14BN4 828 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 SAMD7Q7Z3H4 446 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 C4orf33Q8N1A6 199 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 CCDC63Q8NA47 563 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 RMDN2Q96LZ7 410 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 NINJ2Q9NZG7 142 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 HLA-DRAP01903 254 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 NCKAP1LP55160 1127 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 IRX3P78415 501 aaPredicted RBP16.01■□□□□ 0.15
USP28-214ENST00000545540 PPP2R5EQ16537 467 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 PCNX4Q63HM2 1172 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 ZNF365Q70YC5 407 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 EEPD1Q7L9B9 569 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 KIFAP3Q92845 792 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 APOBEC3GQ9HC16 384 aaKnown RBP16.01■□□□□ 0.15
USP28-214ENST00000545540 NAALADL1Q9UQQ1 740 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 CHUKO15111 745 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 LIG4P49917 911 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 OSTNP61366 133 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 P3H1Q32P28 736 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 TDRD10Q5VZ19 366 aaKnown RBP16.01■□□□□ 0.15
USP28-214ENST00000545540 PIGWQ7Z7B1 504 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 ZBTB33Q86T24 672 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 OR5B17Q8NGF7 314 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 TARS2Q9BW92 718 aaKnown RBP16.01■□□□□ 0.15
USP28-214ENST00000545540 DCLK3Q9C098 648 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 HAPLN2Q9GZV7 340 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 XPNPEP1Q9NQW7 623 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 PXMP2Q9NR77 195 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 ADAM22Q9P0K1 906 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 ZNF541Q9H0D2 1346 aa16.01■□□□□ 0.15
USP28-214ENST00000545540 WDR91A4D1P6 747 aa16■□□□□ 0.15
USP28-214ENST00000545540 DLK2Q6UY11 383 aa16■□□□□ 0.15
USP28-214ENST00000545540 SCARA5Q6ZMJ2 495 aa16■□□□□ 0.15
USP28-214ENST00000545540 POLR3FQ9H1D9 316 aaPredicted RBP16■□□□□ 0.15
USP28-214ENST00000545540 SLCO1B3Q9NPD5 702 aa16■□□□□ 0.15
USP28-214ENST00000545540 MYPNQ86TC9 1320 aa16■□□□□ 0.15
USP28-214ENST00000545540 C10orf71Q711Q0 1435 aa16■□□□□ 0.15
USP28-214ENST00000545540 FSCN2O14926 492 aa16■□□□□ 0.15
USP28-214ENST00000545540 NR3C2P08235 984 aa16■□□□□ 0.15
USP28-214ENST00000545540 GPC3P51654 580 aa16■□□□□ 0.15
USP28-214ENST00000545540 RNASELQ05823 741 aaKnown RBP16■□□□□ 0.15
USP28-214ENST00000545540 SMTNL2Q2TAL5 461 aa16■□□□□ 0.15
USP28-214ENST00000545540 BRDTQ58F21 947 aaPredicted RBP16■□□□□ 0.15
USP28-214ENST00000545540 IZUMO3Q5VZ72 239 aa16■□□□□ 0.15
USP28-214ENST00000545540 ANKMY2Q8IV38 441 aa16■□□□□ 0.15
USP28-214ENST00000545540 MAP4K3Q8IVH8 894 aa16■□□□□ 0.15
USP28-214ENST00000545540 ZBTB10Q96DT7 871 aa16■□□□□ 0.15
USP28-214ENST00000545540 STAMBPL1Q96FJ0 436 aa16■□□□□ 0.15
USP28-214ENST00000545540 DDX27Q96GQ7 796 aaKnown RBP16■□□□□ 0.15
USP28-214ENST00000545540 SNF8Q96H20 258 aa16■□□□□ 0.15
USP28-214ENST00000545540 LRRC19Q9H756 370 aa16■□□□□ 0.15
USP28-214ENST00000545540 ACTR5Q9H9F9 607 aaPredicted RBP16■□□□□ 0.15
USP28-214ENST00000545540 RNF146Q9NTX7 359 aa16■□□□□ 0.15
USP28-214ENST00000545540 SNX3O60493 162 aa16■□□□□ 0.15
USP28-214ENST00000545540 NPM3O75607 178 aaKnown RBP16■□□□□ 0.15
USP28-214ENST00000545540 TTC4O95801 387 aa16■□□□□ 0.15
USP28-214ENST00000545540 RFX1P22670 979 aa16■□□□□ 0.15
USP28-214ENST00000545540 STX2P32856 288 aa16■□□□□ 0.15
USP28-214ENST00000545540 NOP14P78316 857 aaKnown RBP16■□□□□ 0.15
USP28-214ENST00000545540 C4orf19Q8IY42 314 aa16■□□□□ 0.15
USP28-214ENST00000545540 GPD1LQ8N335 351 aa16■□□□□ 0.15
USP28-214ENST00000545540 TGS1Q96RS0 853 aaKnown RBP16■□□□□ 0.15
USP28-214ENST00000545540 ALG13Q9NP73 1137 aaKnown RBP16■□□□□ 0.15
USP28-214ENST00000545540 PARP2Q9UGN5 583 aa16■□□□□ 0.15
USP28-214ENST00000545540 DNPEPQ9ULA0 475 aa16■□□□□ 0.15
USP28-214ENST00000545540 ZNF148Q9UQR1 794 aa16■□□□□ 0.15
USP28-214ENST00000545540 F8VP50 259 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 TLR3O15455 904 aaKnown RBP15.99■□□□□ 0.15
USP28-214ENST00000545540 EDN1P05305 212 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 MAPTP10636 758 aaKnown RBP15.99■□□□□ 0.15
USP28-214ENST00000545540 UNGP13051 313 aaPredicted RBP15.99■□□□□ 0.15
USP28-214ENST00000545540 HADHBP55084 474 aaKnown RBP15.99■□□□□ 0.15
USP28-214ENST00000545540 TRAF1Q13077 416 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 KCNT1Q5JUK3 1230 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 CYP4A22Q5TCH4 519 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 KLF6Q99612 283 aaPredicted RBP15.99■□□□□ 0.15
USP28-214ENST00000545540 ECT2Q9H8V3 914 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 SAYSD1Q9NPB0 183 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 TBC1D22BQ9NU19 505 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 UVRAGQ9P2Y5 699 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 PCDHA10Q9Y5I2 948 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 RGS20O76081 388 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 FDX1P10109 184 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 DNAJC3Q13217 504 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 TAOK1Q7L7X3 1001 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 SLC17A8Q8NDX2 589 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 OSBPL8Q9BZF1 889 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms