RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 APLFQ8IW19 511 aaPredicted RBP15.03■□□□□ -0
LIMS1-215ENST00000544547 SCFD1Q8WVM8 642 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 ARHGEF26Q96DR7 871 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 ANKRD27Q96NW4 1050 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 TMEM117Q9H0C3 514 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 CLIC5Q9NZA1 410 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 TTLL3Q9Y4R7 772 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 RSPH10B2B2RC85 870 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 RTN2O75298 545 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 RSPH10BP0C881 870 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 GRAPQ13588 217 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 KCNK18Q7Z418 384 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 GRAPLQ8TC17 118 aaPredicted RBP15.03■□□□□ -0
LIMS1-215ENST00000544547 NDNQ99608 321 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 SENP1Q9P0U3 644 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 MAGED2Q9UNF1 606 aaPredicted RBP15.03■□□□□ -0
LIMS1-215ENST00000544547 CSADQ9Y600 493 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 FLT1P17948 1338 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 SORBS3O60504 671 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 PYGMP11217 842 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 ARHGAP4P98171 946 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 PRPF39Q86UA1 669 aaKnown RBP15.02■□□□□ -0
LIMS1-215ENST00000544547 NLGN1Q8N2Q7 840 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 FIS1Q9Y3D6 152 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 ARHGAP23Q9P227 1491 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 HNRNPDLO14979 420 aaKnown RBP15.02■□□□□ -0
LIMS1-215ENST00000544547 XPO1O14980 1071 aaKnown RBP15.02■□□□□ -0
LIMS1-215ENST00000544547 ZNF394Q53GI3 561 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 ARHGEF16Q5VV41 709 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 SMYD2Q9NRG4 433 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 NMRK1Q9NWW6 199 aa15.02■□□□□ -0
LIMS1-215ENST00000544547 ABCB11O95342 1321 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 IPO5O00410 1097 aaKnown RBP15.02□□□□□ -0.01
LIMS1-215ENST00000544547 PIAS1O75925 651 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 KRT37O76014 449 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 HIF1AQ16665 826 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 CCNJLQ8IV13 435 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 EIF1ADQ8N9N8 165 aaKnown RBP15.02□□□□□ -0.01
LIMS1-215ENST00000544547 SLC20A1Q8WUM9 679 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 CCDC17Q96LX7 622 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 FAM111AQ96PZ2 611 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 APOL6Q9BWW8 343 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 EBF2Q9HAK2 575 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 STK10O94804 968 aaKnown RBP15.02□□□□□ -0.01
LIMS1-215ENST00000544547 TJP3O95049 919 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 MYL2P10916 166 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 BNIP1Q12981 228 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 MTFR1Q15390 333 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 HADHQ16836 314 aaKnown RBP15.02□□□□□ -0.01
LIMS1-215ENST00000544547 OSBPL8Q9BZF1 889 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 DBNDD1Q9H9R9 158 aa15.02□□□□□ -0.01
LIMS1-215ENST00000544547 MRPL47Q9HD33 250 aaKnown RBP15.02□□□□□ -0.01
LIMS1-215ENST00000544547 CYTH3O43739 400 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 STAM2O75886 525 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 RALAP11233 206 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 SP100P23497 879 aaPredicted RBP15.01□□□□□ -0.01
LIMS1-215ENST00000544547 LIG4P49917 911 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 MCL1Q07820 350 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 ABCB5Q2M3G0 1257 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 HGSNATQ68CP4 663 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 DARS2Q6PI48 645 aaKnown RBP15.01□□□□□ -0.01
LIMS1-215ENST00000544547 C3orf62Q6ZUJ4 267 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 CPA5Q8WXQ8 436 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 ZNF184Q99676 751 aaPredicted RBP15.01□□□□□ -0.01
LIMS1-215ENST00000544547 BLOC1S4Q9NUP1 217 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 SLC5A4Q9NY91 659 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 PSMC3IPQ9P2W1 217 aaPredicted RBP15.01□□□□□ -0.01
LIMS1-215ENST00000544547 UBR1Q8IWV7 1749 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 ZBTB5O15062 677 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 BAG6P46379 1132 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 MARCKSL1P49006 195 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 VAMP7P51809 220 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 FAM228AQ86W67 206 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 ATP11CQ8NB49 1132 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 SLC5A5Q92911 643 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 CNKSR1Q969H4 720 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 PPP1R36Q96LQ0 422 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 WWP1Q9H0M0 922 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 MRPL46Q9H2W6 279 aaKnown RBP15.01□□□□□ -0.01
LIMS1-215ENST00000544547 ERVK-5Q9HDB9 667 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.01□□□□□ -0.01
LIMS1-215ENST00000544547 CCDC189A1A4V9 331 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 EEF1B2P24534 225 aaKnown RBP15.01□□□□□ -0.01
LIMS1-215ENST00000544547 CCDC92Q53HC0 331 aaPredicted RBP15.01□□□□□ -0.01
LIMS1-215ENST00000544547 FLAD1Q8NFF5 587 aa15.01□□□□□ -0.01
LIMS1-215ENST00000544547 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.01□□□□□ -0.01
LIMS1-215ENST00000544547 WDR64B1ANS9 1081 aa15□□□□□ -0.01
LIMS1-215ENST00000544547 FOSP01100 380 aaPredicted RBP15□□□□□ -0.01
LIMS1-215ENST00000544547 CYP11B2P19099 503 aa15□□□□□ -0.01
LIMS1-215ENST00000544547 HOXA7P31268 230 aaPredicted RBP15□□□□□ -0.01
LIMS1-215ENST00000544547 ART3Q13508 389 aa15□□□□□ -0.01
LIMS1-215ENST00000544547 ANKRD20A4Q4UJ75 823 aa15□□□□□ -0.01
LIMS1-215ENST00000544547 TMEM259Q4ZIN3 620 aa15□□□□□ -0.01
LIMS1-215ENST00000544547 UCMAQ8WVF2 138 aa15□□□□□ -0.01
LIMS1-215ENST00000544547 SPIRE2Q8WWL2 714 aa15□□□□□ -0.01
LIMS1-215ENST00000544547 SIKE1Q9BRV8 207 aa15□□□□□ -0.01
LIMS1-215ENST00000544547 GALNT8Q9NY28 637 aa15□□□□□ -0.01
LIMS1-215ENST00000544547 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15□□□□□ -0.01
LIMS1-215ENST00000544547 ADAMTS3O15072 1205 aa15□□□□□ -0.01
LIMS1-215ENST00000544547 TLR3O15455 904 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms