RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PTPRJQ12913 1337 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 FNDC1Q4ZHG4 1894 aaPredicted RBP18.51■□□□□ 0.55
LIG1-204ENST00000542460 CASTOR2A6NHX0 329 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 STX10O60499 249 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 GALTP07902 379 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 LINC00271P0C7V0 271 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 DNAJB2P25686 324 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 LRPAP1P30533 357 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 OR1G1P47890 313 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 IQCB1Q15051 598 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 C1orf220Q5T0J3 134 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 TCERG1LQ5VWI1 586 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 KCNT2Q6UVM3 1135 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 CREBRFQ8IUR6 639 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 TRIM59Q8IWR1 403 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 OR5B17Q8NGF7 314 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 FAM200AQ8TCP9 573 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 ZNF516Q92618 1163 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 ZNF558Q96NG5 402 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 MTMR12Q9C0I1 747 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 NKX2-4Q9H2Z4 354 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 GOLGA2P5Q9HBQ8 144 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 CBX8Q9HC52 389 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 FAN1Q9Y2M0 1017 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 PCDHB12Q9Y5F1 795 aa18.51■□□□□ 0.55
LIG1-204ENST00000542460 NRP1O14786 923 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 TRIM49P0CI25 452 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 TRIM49CP0CI26 452 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 EEF1GP26641 437 aaKnown RBP18.5■□□□□ 0.55
LIG1-204ENST00000542460 GTF2H1P32780 548 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 BMPR1AP36894 532 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 SLC11A1P49279 550 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 CLCNKBP51801 687 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 TAP1Q03518 808 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 UPP1Q16831 310 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 HSP90AA4PQ58FG1 418 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 DCAF17Q5H9S7 520 aaPredicted RBP18.5■□□□□ 0.55
LIG1-204ENST00000542460 CDKAL1Q5VV42 579 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 COLGALT1Q8NBJ5 622 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 SLC35C1Q96A29 364 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 TIFAQ96CG3 184 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 SAMD11Q96NU1 681 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 TGS1Q96RS0 853 aaKnown RBP18.5■□□□□ 0.55
LIG1-204ENST00000542460 ITGA11Q9UKX5 1188 aa18.5■□□□□ 0.55
LIG1-204ENST00000542460 KCNJ18B7U540 433 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 ARHGEF15O94989 841 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 C4BPAP04003 597 aaKnown RBP18.49■□□□□ 0.55
LIG1-204ENST00000542460 GUCY2FP51841 1108 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 KCNJ12Q14500 433 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 TCP11X2Q5H9J9 407 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 PPP2R2DQ66LE6 453 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 DCLRE1AQ6PJP8 1040 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 TRAPPC11Q7Z392 1133 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 C1orf127Q8N9H9 656 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 PAAF1Q9BRP4 392 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 COLEC11Q9BWP8 271 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.49■□□□□ 0.55
LIG1-204ENST00000542460 CITO14578 2027 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 RALGAPA2Q2PPJ7 1873 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 ANO9A1A5B4 782 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 PODXLO00592 558 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 ITGB3P05106 788 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 PPM1AP35813 382 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 PBX3P40426 434 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 MTIF2P46199 727 aaKnown RBP18.49■□□□□ 0.55
LIG1-204ENST00000542460 GCLMP48507 274 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 ERVK-21P61565 698 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 PPP3CAQ08209 521 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 C9orf57Q5W0N0 161 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 LUZP1Q86V48 1076 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 FAM84AQ96KN4 292 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 PLVAPQ9BX97 442 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 TMEM8AQ9HCN3 771 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 SPG21Q9NZD8 308 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 CACNG4Q9UBN1 327 aa18.49■□□□□ 0.55
LIG1-204ENST00000542460 PRG3Q9Y2Y8 225 aaPredicted RBP18.49■□□□□ 0.55
LIG1-204ENST00000542460 R3HCC1Q9Y3T6 440 aaKnown RBP18.49■□□□□ 0.55
LIG1-204ENST00000542460 NT5C1B-RDH14C9J2C7 533 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 PIRO00625 290 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 B3GAT3O94766 335 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 RB1P06400 928 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 ZNF18P17022 549 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 CDK11BP21127 795 aaKnown RBP18.48■□□□□ 0.55
LIG1-204ENST00000542460 CTNNB1P35222 781 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 TPM4P67936 248 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 RBP5P82980 135 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 BIRC3Q13489 604 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 ZACNQ401N2 412 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 TDRD10Q5VZ19 366 aaKnown RBP18.48■□□□□ 0.55
LIG1-204ENST00000542460 KRT39Q6A163 491 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 GPR153Q6NV75 609 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 C15orf39Q6ZRI6 1047 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 SV2AQ7L0J3 742 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 SLC39A11Q8N1S5 342 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 RABGGTAQ92696 567 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 C17orf80Q9BSJ5 609 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 HSD3B7Q9H2F3 369 aa18.48■□□□□ 0.55
LIG1-204ENST00000542460 C5orf67F2Z3F1 127 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 GOLGA6L19H0YKK7 550 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 TMEM189-UBE2V1I3L0A0 370 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms