RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 CLTAP09496 248 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 ACO1P21399 889 aaKnown RBP15.57■□□□□ 0.08
CLIP1-216ENST00000541410 CYP2C19P33261 490 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 PWP2Q15269 919 aaKnown RBP15.57■□□□□ 0.08
CLIP1-216ENST00000541410 TAF1CQ15572 869 aaPredicted RBP15.57■□□□□ 0.08
CLIP1-216ENST00000541410 DUSP28Q4G0W2 176 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 CCDC70Q6NSX1 233 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 TSHZ1Q6ZSZ6 1077 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 NLRP7Q8WX94 980 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 ALG3Q92685 438 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 KRT35Q92764 455 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 CYFIP2Q96F07 1278 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 TRIM7Q9C029 511 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 PTPRHQ9HD43 1115 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 PPME1Q9Y570 386 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 TRIP11Q15643 1979 aa15.57■□□□□ 0.08
CLIP1-216ENST00000541410 RBM47A0AV96 593 aaKnown RBP15.56■□□□□ 0.08
CLIP1-216ENST00000541410 TARSL2A2RTX5 802 aaKnown RBP15.56■□□□□ 0.08
CLIP1-216ENST00000541410 POLR3GO15318 223 aaPredicted RBP15.56■□□□□ 0.08
CLIP1-216ENST00000541410 PPFIA4O75335 1185 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 PPFIA1Q13136 1202 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 GRM1Q13255 1194 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 CASP8Q14790 479 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 ZNF484Q5JVG2 852 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 MTHFD1LQ6UB35 978 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 EXOC8Q8IYI6 725 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 FAM49AQ9H0Q0 323 aaPredicted RBP15.56■□□□□ 0.08
CLIP1-216ENST00000541410 ABHD16BQ9H3Z7 469 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 ATP8B3O60423 1300 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 DDX3YO15523 660 aaKnown RBP15.56■□□□□ 0.08
CLIP1-216ENST00000541410 KRT19P08727 400 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 HOXC6P09630 235 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 WEE2P0C1S8 567 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 GZMAP12544 262 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 SCP2P22307 547 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 PROZP22891 400 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 MAPK4P31152 587 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 TNFAIP2Q03169 654 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 ITIH3Q06033 890 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 GRIK4Q16099 956 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 MARCH8Q5T0T0 291 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 DAB2IPQ5VWQ8 1189 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 CCNI2Q6ZMN8 369 aaPredicted RBP15.56■□□□□ 0.08
CLIP1-216ENST00000541410 ZNF467Q7Z7K2 595 aaPredicted RBP15.56■□□□□ 0.08
CLIP1-216ENST00000541410 RHOT2Q8IXI1 618 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 ZNF564Q8TBZ8 553 aaPredicted RBP15.56■□□□□ 0.08
CLIP1-216ENST00000541410 DDX47Q9H0S4 455 aaKnown RBP15.56■□□□□ 0.08
CLIP1-216ENST00000541410 NR2E1Q9Y466 385 aa15.56■□□□□ 0.08
CLIP1-216ENST00000541410 TMEM191BP0C7N4 346 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 CYP2B6P20813 491 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 COMTP21964 271 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 CLEC16AQ2KHT3 1053 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 ACAD10Q6JQN1 1059 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 ENOSF1Q7L5Y1 443 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 HDXQ7Z353 690 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 WDR49Q8IV35 697 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 RBBP8NLQ8NC74 664 aaPredicted RBP15.55■□□□□ 0.08
CLIP1-216ENST00000541410 PBKQ96KB5 322 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 SELENOOQ9BVL4 669 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 STIM2Q9P246 746 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 RNF14Q9UBS8 474 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 CNOT8Q9UFF9 292 aaKnown RBP15.55■□□□□ 0.08
CLIP1-216ENST00000541410 PCDHB2Q9Y5E7 798 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 MAP2K7O14733 419 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 MEFVO15553 781 aaPredicted RBP15.55■□□□□ 0.08
CLIP1-216ENST00000541410 RAD51CO43502 376 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 FGGP02679 453 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 NFICP08651 508 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 ARF4P18085 180 aaPredicted RBP15.55■□□□□ 0.08
CLIP1-216ENST00000541410 GNA15P30679 374 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 PHKA2P46019 1235 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 GUCY2DQ02846 1103 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 ENPEPQ07075 957 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 SMC1AQ14683 1233 aaKnown RBP15.55■□□□□ 0.08
CLIP1-216ENST00000541410 DUOXA2Q1HG44 320 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 KIZQ2M2Z5 673 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 RASAL3Q86YV0 1011 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 IMPG2Q9BZV3 1241 aa15.55■□□□□ 0.08
CLIP1-216ENST00000541410 NXF1Q9UBU9 619 aaKnown RBP15.55■□□□□ 0.08
CLIP1-216ENST00000541410 PGRMC1O00264 195 aaKnown RBP15.54■□□□□ 0.08
CLIP1-216ENST00000541410 KRIT1O00522 736 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 THAP12O43422 761 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 HEXIM1O94992 359 aaKnown RBP15.54■□□□□ 0.08
CLIP1-216ENST00000541410 TRPC3Q13507 836 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 IFT81Q8WYA0 676 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 EMID1Q96A84 441 aaPredicted RBP15.54■□□□□ 0.08
CLIP1-216ENST00000541410 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.54■□□□□ 0.08
CLIP1-216ENST00000541410 EPB41L5Q9HCM4 733 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 POLIQ9UNA4 740 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 H3BQF6 201 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 GJB6O95452 261 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 ASS1P00966 412 aaKnown RBP15.54■□□□□ 0.08
CLIP1-216ENST00000541410 UNGP13051 313 aaPredicted RBP15.54■□□□□ 0.08
CLIP1-216ENST00000541410 RRM1P23921 792 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 RAP1GAPP47736 663 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 GUCY2FP51841 1108 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 ORC1Q13415 861 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 AMHR2Q16671 573 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 DGKDQ16760 1214 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 OLFML2BQ68BL8 750 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms