RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 USP20Q9Y2K6 914 aa29.45■■■□□ 2.31
CHFR-218ENST00000540963 CACNA1BQ00975 2339 aa29.45■■■□□ 2.3
CHFR-218ENST00000540963 SMIM28A0A1B0GU29 152 aa29.44■■■□□ 2.3
CHFR-218ENST00000540963 SYN3O14994 580 aa29.44■■■□□ 2.3
CHFR-218ENST00000540963 CEBPBP17676 345 aa29.44■■■□□ 2.3
CHFR-218ENST00000540963 LIG1P18858 919 aa29.44■■■□□ 2.3
CHFR-218ENST00000540963 IGFBP6P24592 240 aaPredicted RBP29.44■■■□□ 2.3
CHFR-218ENST00000540963 ATXN1P54253 815 aaKnown RBP29.44■■■□□ 2.3
CHFR-218ENST00000540963 NT5DC1Q5TFE4 455 aa29.44■■■□□ 2.3
CHFR-218ENST00000540963 ALKAL1Q6UXT8 129 aa29.44■■■□□ 2.3
CHFR-218ENST00000540963 ZNF687Q8N1G0 1237 aa29.44■■■□□ 2.3
CHFR-218ENST00000540963 C3orf58Q8NDZ4 430 aa29.44■■■□□ 2.3
CHFR-218ENST00000540963 NSUN7Q8NE18 718 aaKnown RBP29.44■■■□□ 2.3
CHFR-218ENST00000540963 CHRDQ9H2X0 955 aa29.44■■■□□ 2.3
CHFR-218ENST00000540963 PRRG1O14668 218 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 FCARP24071 287 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 MCM7P33993 719 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 GRM5P41594 1212 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 YARSP54577 528 aaKnown RBP29.43■■■□□ 2.3
CHFR-218ENST00000540963 MTAPQ13126 283 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 TPGS2Q68CL5 300 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 HAUS3Q68CZ6 603 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 IRF7Q92985 503 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 RTKNQ9BST9 563 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 CCDC94Q9BW85 323 aaPredicted RBP29.43■■■□□ 2.3
CHFR-218ENST00000540963 BRD9Q9H8M2 597 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 CDV3Q9UKY7 258 aaKnown RBP29.43■■■□□ 2.3
CHFR-218ENST00000540963 MAFFQ9ULX9 164 aa29.43■■■□□ 2.3
CHFR-218ENST00000540963 TPRP12270 2363 aaKnown RBP29.42■■■□□ 2.3
CHFR-218ENST00000540963 CITO14578 2027 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 WDR27A2RRH5 827 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 H7C4K7 107 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 BRCC3P46736 316 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 ME3Q16798 604 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 POTEHQ6S545 545 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 NECAB1Q8N987 351 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 TRMT61BQ9BVS5 477 aaKnown RBP29.42■■■□□ 2.3
CHFR-218ENST00000540963 GOLGA2P5Q9HBQ8 144 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 GMEB2Q9UKD1 530 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 COL4A2P08572 1712 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 PHLPP2Q6ZVD8 1323 aa29.42■■■□□ 2.3
CHFR-218ENST00000540963 K7ERI5 159 aa29.41■■■□□ 2.3
CHFR-218ENST00000540963 TGM1P22735 817 aa29.41■■■□□ 2.3
CHFR-218ENST00000540963 MRPL58Q14197 206 aaKnown RBP29.41■■■□□ 2.3
CHFR-218ENST00000540963 TSSK4Q6SA08 328 aa29.41■■■□□ 2.3
CHFR-218ENST00000540963 ASB16Q96NS5 453 aa29.41■■■□□ 2.3
CHFR-218ENST00000540963 CORO1BQ9BR76 489 aa29.41■■■□□ 2.3
CHFR-218ENST00000540963 KIFC3Q9BVG8 833 aa29.41■■■□□ 2.3
CHFR-218ENST00000540963 I3L4J1 428 aa29.4■■■□□ 2.3
CHFR-218ENST00000540963 OR52Z1P0C646 297 aa29.4■■■□□ 2.3
CHFR-218ENST00000540963 TDGF1P13385 188 aa29.4■■■□□ 2.3
CHFR-218ENST00000540963 FAM78AQ5JUQ0 283 aa29.4■■■□□ 2.3
CHFR-218ENST00000540963 CYP4A22Q5TCH4 519 aa29.4■■■□□ 2.3
CHFR-218ENST00000540963 PDZD4Q76G19 769 aaPredicted RBP29.4■■■□□ 2.3
CHFR-218ENST00000540963 MAP4K3Q8IVH8 894 aa29.4■■■□□ 2.3
CHFR-218ENST00000540963 CELF5Q8N6W0 485 aaKnown RBP29.4■■■□□ 2.3
CHFR-218ENST00000540963 LEMD2Q8NC56 503 aa29.4■■■□□ 2.3
CHFR-218ENST00000540963 INSL5Q9Y5Q6 135 aa29.4■■■□□ 2.3
CHFR-218ENST00000540963 EPG5Q9HCE0 2579 aa29.39■■■□□ 2.3
CHFR-218ENST00000540963 PODXLO00592 558 aa29.39■■■□□ 2.3
CHFR-218ENST00000540963 KCNE1P15382 129 aa29.39■■■□□ 2.3
CHFR-218ENST00000540963 RPL9P32969 192 aaKnown RBP29.39■■■□□ 2.3
CHFR-218ENST00000540963 MLLT6P55198 1093 aaPredicted RBP29.39■■■□□ 2.3
CHFR-218ENST00000540963 SOX4Q06945 474 aaPredicted RBP29.39■■■□□ 2.3
CHFR-218ENST00000540963 SAFBQ15424 915 aaKnown RBP eCLIP29.39■■■□□ 2.3
CHFR-218ENST00000540963 ELMOD1Q8N336 334 aa29.39■■■□□ 2.3
CHFR-218ENST00000540963 DEPDC1BQ8WUY9 529 aa29.39■■■□□ 2.3
CHFR-218ENST00000540963 CYP4F11Q9HBI6 524 aa29.39■■■□□ 2.3
CHFR-218ENST00000540963 PTPRHQ9HD43 1115 aa29.39■■■□□ 2.3
CHFR-218ENST00000540963 RAB23Q9ULC3 237 aa29.39■■■□□ 2.3
CHFR-218ENST00000540963 TICRRQ7Z2Z1 1910 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 PSMC3P17980 439 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 CCR3P51677 355 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 IQCEQ6IPM2 695 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 SMARCD2Q92925 531 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 CNTNAP3BQ96NU0 1288 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 ACO2Q99798 780 aaKnown RBP29.38■■■□□ 2.29
CHFR-218ENST00000540963 CNTNAP3Q9BZ76 1288 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 CDT1Q9H211 546 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 TMEM134Q9H6X4 195 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 TRPV4Q9HBA0 871 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 ZNF334Q9HCZ1 680 aaPredicted RBP29.38■■■□□ 2.29
CHFR-218ENST00000540963 USP18Q9UMW8 372 aa29.38■■■□□ 2.29
CHFR-218ENST00000540963 SPTBN2O15020 2390 aa29.37■■■□□ 2.29
CHFR-218ENST00000540963 LRP3O75074 770 aa29.37■■■□□ 2.29
CHFR-218ENST00000540963 GRM2Q14416 872 aa29.37■■■□□ 2.29
CHFR-218ENST00000540963 LAIR1Q6GTX8 287 aa29.37■■■□□ 2.29
CHFR-218ENST00000540963 FAM3CQ92520 227 aa29.37■■■□□ 2.29
CHFR-218ENST00000540963 TCEAL4Q96EI5 215 aa29.37■■■□□ 2.29
CHFR-218ENST00000540963 BHMT2Q9H2M3 363 aa29.37■■■□□ 2.29
CHFR-218ENST00000540963 PPP4R2Q9NY27 417 aa29.37■■■□□ 2.29
CHFR-218ENST00000540963 FBXL5Q9UKA1 691 aa29.37■■■□□ 2.29
CHFR-218ENST00000540963 NDRG2Q9UN36 371 aaKnown RBP29.37■■■□□ 2.29
CHFR-218ENST00000540963 LARGE1O95461 756 aa29.36■■■□□ 2.29
CHFR-218ENST00000540963 SEC24AO95486 1093 aa29.36■■■□□ 2.29
CHFR-218ENST00000540963 EPHA5P54756 1037 aa29.36■■■□□ 2.29
CHFR-218ENST00000540963 ZNF568Q3ZCX4 644 aa29.36■■■□□ 2.29
CHFR-218ENST00000540963 C1orf228Q6PIY5 440 aa29.36■■■□□ 2.29
CHFR-218ENST00000540963 CEP120Q8N960 986 aa29.36■■■□□ 2.29
CHFR-218ENST00000540963 E2F7Q96AV8 911 aa29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms