RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CLDN10P78369 228 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 CETN1Q12798 172 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 JADE1Q6IE81 842 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 LRRC55Q6ZSA7 311 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 GPR65Q8IYL9 337 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 FBXO22Q8NEZ5 403 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 ANKRD20A12PQ8NF67 263 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 PARD3BQ8TEW8 1205 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 CGRRF1Q99675 332 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 IKZF4Q9H2S9 585 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 ZNF576Q9H609 170 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 MAGEC2Q9UBF1 373 aaPredicted RBP18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 YBX2Q9Y2T7 364 aaKnown RBP18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 TDRD15B5MCY1 1934 aaKnown RBP18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 AKAP3O75969 853 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 PBX2P40425 430 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 OR1G1P47890 313 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 GATMP50440 423 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 TPM4P67936 248 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 BFSP1Q12934 665 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 ZSCAN23Q3MJ62 389 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 CCDC40Q4G0X9 1142 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 EPC2Q52LR7 807 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 TJAP1Q5JTD0 557 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 ZBTB41Q5SVQ8 909 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 PDXDC1Q6P996 788 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 ZNF560Q96MR9 790 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 SRRTQ9BXP5 876 aaKnown RBP18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 PDE11AQ9HCR9 933 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 INTS13Q9NVM9 706 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 MIOSQ9NXC5 875 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 DPP3Q9NY33 737 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 LMCD1Q9NZU5 365 aa18.94■□□□□ 0.62
CLSTN3-210ENST00000540931 FSD2A1L4K1 749 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 H3BNC9 293 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 NRP1O14786 923 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 N4BP1O75113 896 aaKnown RBP18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 TADA2AO75478 443 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 DDHD2O94830 711 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 TPM2P07951 284 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 DLATP10515 647 aaKnown RBP18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 RBP5P82980 135 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 TFAMQ00059 246 aaKnown RBP18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 SPAG1Q07617 926 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 MYO1EQ12965 1108 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 NAB2Q15742 525 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 PTPROQ16827 1216 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 ZNF280BQ86YH2 543 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 LRRC52Q8N7C0 313 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 IGSF21Q96ID5 467 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 ZMAT2Q96NC0 199 aaKnown RBP18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 DUSP9Q99956 384 aaKnown RBP18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 ADAM28Q9UKQ2 775 aa18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 SF3B1O75533 1304 aaKnown RBP eCLIP18.93■□□□□ 0.62
CLSTN3-210ENST00000540931 SYCE3A1L190 88 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 LCHNA4D1U4 455 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 TRIM49BA6NDI0 452 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 MYOGP15173 224 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 PMS1P54277 932 aaKnown RBP18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 MYL5Q02045 173 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 UPP1Q16831 310 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 GLRA4Q5JXX5 417 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 DDX53Q86TM3 631 aaKnown RBP18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 SLC39A11Q8N1S5 342 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 CCDC150Q8NCX0 1101 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 PPP2R3CQ969Q6 453 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 CCDC127Q96BQ5 260 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 OXCT2Q9BYC2 517 aaPredicted RBP18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 NUB1Q9Y5A7 615 aa18.92■□□□□ 0.62
CLSTN3-210ENST00000540931 MYO9BQ13459 2157 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 BECN2A8MW95 431 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 PODXLO00592 558 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 P4HA2O15460 535 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 LPXNO60711 386 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 PHACTR2O75167 634 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 FGF18O76093 207 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 B3GAT3O94766 335 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 EEF1GP26641 437 aaKnown RBP18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 ATICP31939 592 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 SLC11A1P49279 550 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 CASP4P49662 377 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 STX17P56962 302 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 CREMQ03060 361 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 TRPC3Q13507 836 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 TAF4BQ92750 862 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 FAXDC2Q96IV6 333 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 IMPG2Q9BZV3 1241 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 PLAGL2Q9UPG8 496 aa18.91■□□□□ 0.62
CLSTN3-210ENST00000540931 TNFRSF10AO00220 468 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 PMM2O15305 246 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 NFICP08651 508 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 LINC00271P0C7V0 271 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 ZNF165P49910 485 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 AFF1P51825 1210 aaKnown RBP18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 GPM6BQ13491 265 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 SV2CQ496J9 727 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 ANO6Q4KMQ2 910 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 KRT39Q6A163 491 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 SPATA18Q8TC71 538 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 BORCS6Q96GS4 357 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms