RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 FBXL18Q96ME1 805 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 TTPALQ9BTX7 342 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 LRRC27Q9C0I9 530 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 RPF1Q9H9Y2 349 aaKnown RBP16.4■□□□□ 0.22
UBE3B-212ENST00000540230 PLEKHA5Q9HAU0 1116 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 MAGEF1Q9HAY2 307 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 SSX2IPQ9Y2D8 614 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 PCDHB13Q9Y5F0 798 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 C2orf16Q68DN1 1984 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 C19orf67A6NJJ6 358 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 ADAM12O43184 909 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 ADH1AP07327 375 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 SPATA31D3P0C874 917 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 HOXB8P17481 243 aaPredicted RBP16.4■□□□□ 0.22
UBE3B-212ENST00000540230 FGFR3P22607 806 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 HOXD13P35453 343 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 WNT7BP56706 349 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 AMPD3Q01432 767 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 JADE1Q6IE81 842 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 SPATA31D4Q6ZUB0 917 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 PPFIBP1Q86W92 1011 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 PALB2Q86YC2 1186 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 CBWD1Q9BRT8 395 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 GOLPH3LQ9H4A5 285 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 MAN1C1Q9NR34 630 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 FNIP2Q9P278 1114 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 PRKAG3Q9UGI9 489 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 ATP6V1DQ9Y5K8 247 aa16.4■□□□□ 0.22
UBE3B-212ENST00000540230 MTCL1Q9Y4B5 1905 aaKnown RBP16.39■□□□□ 0.21
UBE3B-212ENST00000540230 PPEF2O14830 753 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 NFICP08651 508 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 SLFN14P0C7P3 912 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 SSTR3P32745 418 aaPredicted RBP16.39■□□□□ 0.21
UBE3B-212ENST00000540230 NDUFA8P51970 172 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 CBX2Q14781 532 aaPredicted RBP16.39■□□□□ 0.21
UBE3B-212ENST00000540230 PSMD5Q16401 504 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 KYAT1Q16773 422 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 FAM26FQ5R3K3 315 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 SLFN12LQ6IEE8 588 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 RSPO2Q6UXX9 243 aaPredicted RBP16.39■□□□□ 0.21
UBE3B-212ENST00000540230 TMC5Q6UXY8 1006 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.39■□□□□ 0.21
UBE3B-212ENST00000540230 UNC13DQ70J99 1090 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 GPR65Q8IYL9 337 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 SAAL1Q96ER3 474 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 DDX27Q96GQ7 796 aaKnown RBP16.39■□□□□ 0.21
UBE3B-212ENST00000540230 CLSTN3Q9BQT9 956 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 SCAND2PQ9GZW5 306 aaPredicted RBP16.39■□□□□ 0.21
UBE3B-212ENST00000540230 ADAM7Q9H2U9 754 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.39■□□□□ 0.21
UBE3B-212ENST00000540230 DZANK1Q9NVP4 752 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 EXOC7Q9UPT5 735 aa16.39■□□□□ 0.21
UBE3B-212ENST00000540230 FAM237AA0A1B0GTK4 181 aa16.38■□□□□ 0.21
UBE3B-212ENST00000540230 TGM5O43548 720 aa16.38■□□□□ 0.21
UBE3B-212ENST00000540230 KLRC4O43908 158 aa16.38■□□□□ 0.21
UBE3B-212ENST00000540230 GLUD1P00367 558 aa16.38■□□□□ 0.21
UBE3B-212ENST00000540230 RPL9P32969 192 aaKnown RBP16.38■□□□□ 0.21
UBE3B-212ENST00000540230 ELAVL2Q12926 359 aaKnown RBP16.38■□□□□ 0.21
UBE3B-212ENST00000540230 ALCAMQ13740 583 aa16.38■□□□□ 0.21
UBE3B-212ENST00000540230 EPM2AIP1Q7L775 607 aaPredicted RBP16.38■□□□□ 0.21
UBE3B-212ENST00000540230 CEP57L1Q8IYX8 460 aa16.38■□□□□ 0.21
UBE3B-212ENST00000540230 SYCP3Q8IZU3 236 aa16.38■□□□□ 0.21
UBE3B-212ENST00000540230 PAGE5Q96GU1 130 aa16.38■□□□□ 0.21
UBE3B-212ENST00000540230 PCIF1Q9H4Z3 704 aa16.38■□□□□ 0.21
UBE3B-212ENST00000540230 POMKQ9H5K3 350 aa16.38■□□□□ 0.21
UBE3B-212ENST00000540230 UBQLN1Q9UMX0 589 aaKnown RBP16.38■□□□□ 0.21
UBE3B-212ENST00000540230 DENND4AQ7Z401 1863 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 GOLGA8IPA6NC78 632 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 GOLGA8JA6NMD2 632 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 RFPL2O75678 378 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 SP100P23497 879 aaPredicted RBP16.37■□□□□ 0.21
UBE3B-212ENST00000540230 LRPAP1P30533 357 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 NUCB2P80303 420 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 LILRA6Q6PI73 481 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 EFCAB13Q8IY85 973 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 FSIP1Q8NA03 581 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 FAM84AQ96KN4 292 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 FAM213AQ9BRX8 229 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 PHF7Q9BWX1 381 aaPredicted RBP16.37■□□□□ 0.21
UBE3B-212ENST00000540230 SFXN1Q9H9B4 322 aa16.37■□□□□ 0.21
UBE3B-212ENST00000540230 PRR29P0C7W0 189 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 CYP3A5P20815 502 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 GARTP22102 1010 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 SYKP43405 635 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 ITIH3Q06033 890 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 POSTNQ15063 836 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 SPATA1Q5VX52 437 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 ZNF507Q8TCN5 953 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 SCFD1Q8WVM8 642 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 RPGRIP1Q96KN7 1286 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 PYM1Q9BRP8 204 aaKnown RBP16.36■□□□□ 0.21
UBE3B-212ENST00000540230 TMEM206Q9H813 350 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 SLC39A2Q9NP94 309 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 MTRRQ9UBK8 725 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 NUB1Q9Y5A7 615 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 SCN1AP35498 2009 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 TRIOO75962 3097 aa16.36■□□□□ 0.21
UBE3B-212ENST00000540230 A0A1W2PQ27 194 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 A0A1W2PQ64 194 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 A0A1W2PQD8 194 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms