RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 PPP1R10Q96QC0 940 aaKnown RBP12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 C2orf40Q9H1Z8 148 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 ZSWIM6Q9HCJ5 1215 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 GPRC5CQ9NQ84 441 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 ANGPTL2Q9UKU9 493 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 WDR27A2RRH5 827 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 CHURC1-FNTBB4DL54 471 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 ACKR2O00590 384 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 NRG2O14511 850 aaPredicted RBP12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 USO1O60763 962 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 NEFLP07196 543 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 CCNE1P24864 410 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 FNTBP49356 437 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 ROR1Q01973 937 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 STK3Q13188 491 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 GAS6Q14393 721 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 MAPK6Q16659 721 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 EARS2Q5JPH6 523 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 CYP4A22Q5TCH4 519 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 VITQ6UXI7 678 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 PDZD4Q76G19 769 aaPredicted RBP12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 LONP2Q86WA8 852 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 SKAP1Q86WV1 359 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 MCPH1Q8NEM0 835 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 DEPDC1BQ8WUY9 529 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 ZSWIM3Q96MP5 696 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 LARP6Q9BRS8 491 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 TTC12Q9H892 705 aaPredicted RBP12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 GDAQ9Y2T3 454 aa12.81□□□□□ -0.36
CLSTN3-209ENST00000539982 I3L4J1 428 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 ZNF263O14978 683 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 PAPSS2O95340 614 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 SEC24AO95486 1093 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 PRKCBP05771 671 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 ATP2B1P20020 1258 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 VIPR2P41587 438 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 CCR2P41597 374 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 BRCC3P46736 316 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 DMWDQ09019 674 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 SRSF5Q13243 272 aaKnown RBP12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 PTGDRQ13258 359 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 CALCRLQ16602 461 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 DCAF4L1Q3SXM0 396 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 GLRA4Q5JXX5 417 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 EEF1DP3Q658K8 133 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 IL31Q6EBC2 164 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 IQCEQ6IPM2 695 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 C1orf228Q6PIY5 440 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 MFSD6LQ8IWD5 586 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 C3orf58Q8NDZ4 430 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 ZNF512Q96ME7 567 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 TRPV4Q9HBA0 871 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 CYP4F11Q9HBI6 524 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 GJB4Q9NTQ9 266 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 USP20Q9Y2K6 914 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 INSL5Q9Y5Q6 135 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 GTF3C3Q9Y5Q9 886 aa12.8□□□□□ -0.36
CLSTN3-209ENST00000539982 RALGAPA1Q6GYQ0 2036 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 SMIM28A0A1B0GU29 152 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 K7ESF4 209 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 ARNTLO00327 626 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 MOSPD3O75425 235 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 CDKL5O76039 1030 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 PMLP29590 882 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 TXKP42681 527 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 LIMK1P53667 647 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 ARPP19P56211 112 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 SHC2P98077 582 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 MRPL58Q14197 206 aaKnown RBP12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 LRRC32Q14392 662 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 N4BP2L1Q5TBK1 243 aaPredicted RBP12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 TPGS2Q68CL5 300 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 HS6ST3Q8IZP7 471 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 ELMOD1Q8N336 334 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 FAM160A2Q8N612 972 aaPredicted RBP12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 DEPTORQ8TB45 409 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 ZSCAN18Q8TBC5 510 aaPredicted RBP12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 E2F7Q96AV8 911 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 MSANTD3Q96H12 275 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 CCDC113Q9H0I3 377 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 GOLGA2P5Q9HBQ8 144 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 CYP46A1Q9Y6A2 500 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 COL4A2P08572 1712 aa12.79□□□□□ -0.36
CLSTN3-209ENST00000539982 CNOT1A5YKK6 2376 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 FAM205CA6NFA0 338 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 H7C4K7 107 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 TM4SF5O14894 197 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 SYN3O14994 580 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 EDN1P05305 212 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 SPATA31C1P0DKV0 1188 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 LIG1P18858 919 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 KCNA4P22459 653 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 HOXA6P31267 233 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 NAMPTP43490 491 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 DGKKQ5KSL6 1271 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 HEATR6Q6AI08 1181 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 CEP68Q76N32 757 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 LEMD2Q8NC56 503 aa12.78□□□□□ -0.36
CLSTN3-209ENST00000539982 CSGALNACT1Q8TDX6 532 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms