RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 THNSL1Q8IYQ7 743 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 CEP120Q8N960 986 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 HDAC7Q8WUI4 952 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 TATDN2Q93075 761 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 KREMEN1Q96MU8 473 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 LRRC1Q9BTT6 524 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 FAM49AQ9H0Q0 323 aaPredicted RBP18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 DAAM1Q9Y4D1 1078 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 MYADML2A6NDP7 307 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 PSEN2P49810 448 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 OSTNP61366 133 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 FSCN1Q16658 493 aaKnown RBP18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 ZNF568Q3ZCX4 644 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 ZACNQ401N2 412 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 DNAAF5Q86Y56 855 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 IFNLR1Q8IU57 520 aaPredicted RBP18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 SPATA4Q8NEY3 305 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 OR5B17Q8NGF7 314 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 HELQQ8TDG4 1101 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 SCLT1Q96NL6 688 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 PRMT7Q9NVM4 692 aaPredicted RBP18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 DMGDHQ9UI17 866 aaKnown RBP18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 NRCAMQ92823 1304 aa18.35■□□□□ 0.53
PCDHB17P-201ENST00000539533 MOCS3O95396 460 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 CYBAP13498 195 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 HTTP42858 3142 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 SCARA3Q6AZY7 606 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 BRSK2Q8IWQ3 736 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 FAM212AQ96EL1 285 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 CPB2Q96IY4 423 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 CPSF3Q9UKF6 684 aaKnown RBP18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 HAS3O00219 553 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 BIRC3Q13489 604 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 FAM187BQ17R55 369 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 KIZQ2M2Z5 673 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 NT5C1BQ96P26 610 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 OSBPL9Q96SU4 736 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 CGRRF1Q99675 332 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 PACSIN1Q9BY11 444 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 CDT1Q9H211 546 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 SALL4Q9UJQ4 1053 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 GINS2Q9Y248 185 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 TNFSF13BQ9Y275 285 aa18.34■□□□□ 0.53
PCDHB17P-201ENST00000539533 ZEB2O60315 1214 aa18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 DUSP11O75319 330 aaKnown RBP18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 VNN1O95497 513 aa18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 C6orf222P0C671 652 aaPredicted RBP18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 USP8P40818 1118 aa18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 ZNF200P98182 395 aaPredicted RBP18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 SP3Q02447 781 aa18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 MFSD14CQ5VZR4 134 aa18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 RUFY4Q6ZNE9 571 aa18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 EFCAB13Q8IY85 973 aa18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 TMEM192Q8IY95 271 aa18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 OLIG1Q8TAK6 271 aa18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 NAGPAQ9UK23 515 aa18.33■□□□□ 0.53
PCDHB17P-201ENST00000539533 GPR25O00155 361 aa18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 DDX3XO00571 662 aaKnown RBP eCLIP18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 PJA2O43164 708 aa18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 HLA-DRAP01903 254 aa18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 TCP1P17987 556 aaKnown RBP18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 IRAK1P51617 712 aa18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 ALS2CR12Q96Q35 445 aa18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 CREBZFQ9NS37 354 aa18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 RNF186Q9NXI6 227 aa18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 HYOU1Q9Y4L1 999 aa18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 BRCA2P51587 3418 aa18.33■□□□□ 0.52
PCDHB17P-201ENST00000539533 MBLAC1A4D2B0 266 aaPredicted RBP18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 TRPA1O75762 1119 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 CYP2C9P11712 490 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 ARF4P18085 180 aaPredicted RBP18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 FGFR4P22455 802 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 MFAP3P55082 362 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 PURAQ00577 322 aaKnown RBP18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 SKIDA1Q1XH10 827 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 ALKBH5Q6P6C2 394 aaKnown RBP18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 GLYCTKQ8IVS8 523 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 LNX1Q8TBB1 728 aaPredicted RBP18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 CDHR5Q9HBB8 845 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 TREHO43280 583 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 PGK1P00558 417 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 PIK3CAP42336 1068 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 ADAM17P78536 824 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 MRPS25P82663 173 aaKnown RBP18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 SLC7A5Q01650 507 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 KIF22Q14807 665 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 SPOPLQ6IQ16 392 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 SH3GL2Q99962 352 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 NCAPGQ9BPX3 1015 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 SYT11Q9BT88 431 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 PDZD7Q9H5P4 517 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 ACP6Q9NPH0 428 aa18.32■□□□□ 0.52
PCDHB17P-201ENST00000539533 GOLGA8KD6RF30 607 aa18.31■□□□□ 0.52
PCDHB17P-201ENST00000539533 CCDC172P0C7W6 258 aa18.31■□□□□ 0.52
PCDHB17P-201ENST00000539533 CACNB2Q08289 660 aaPredicted RBP18.31■□□□□ 0.52
PCDHB17P-201ENST00000539533 NAB2Q15742 525 aa18.31■□□□□ 0.52
PCDHB17P-201ENST00000539533 GNASQ5JWF2 1037 aa18.31■□□□□ 0.52
PCDHB17P-201ENST00000539533 VPS36Q86VN1 386 aa18.31■□□□□ 0.52
PCDHB17P-201ENST00000539533 SLC30A5Q8TAD4 765 aa18.31■□□□□ 0.52
PCDHB17P-201ENST00000539533 SHC3Q92529 594 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms