RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 PLCB3Q01970 1234 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 MUM1Q2TAK8 710 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 FAM102BQ5T8I3 360 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 TAS1R2Q8TE23 839 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 SHC3Q92529 594 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 DCTN4Q9UJW0 460 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 ZMYND8Q9ULU4 1186 aaPredicted RBP11.96□□□□□ -0.5
SYNE1-237ENST00000539504 CHKBQ9Y259 395 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 SUGT1Q9Y2Z0 365 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 TMEM150BA6NC51 233 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 SORBS3O60504 671 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 IFNB1P01574 187 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 PLS3P13797 630 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 ATF7P17544 494 aaPredicted RBP11.95□□□□□ -0.5
SYNE1-237ENST00000539504 CALB2P22676 271 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 SKIV2L2P42285 1042 aaKnown RBP11.95□□□□□ -0.5
SYNE1-237ENST00000539504 NSFP46459 744 aaKnown RBP11.95□□□□□ -0.5
SYNE1-237ENST00000539504 MXRA7P84157 204 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 BLMHQ13867 455 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 SNRNP35Q16560 246 aaKnown RBP11.95□□□□□ -0.5
SYNE1-237ENST00000539504 TSNAXIP1Q2TAA8 658 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 PASD1Q8IV76 773 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 C7orf43Q8WVR3 580 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 UTP4Q969X6 686 aaKnown RBP11.95□□□□□ -0.5
SYNE1-237ENST00000539504 ADGRA3Q8IWK6 1321 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 PI4K2BG5E9Z4 385 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 MYBPC2Q14324 1141 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 TCEAL1Q15170 157 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 GNPTABQ3T906 1256 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 C1orf220Q5T0J3 134 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 FAM13CQ8NE31 585 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 NGLY1Q96IV0 654 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 TBC1D10AQ9BXI6 508 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 MOV10L1Q9BXT6 1211 aaKnown RBP11.95□□□□□ -0.5
SYNE1-237ENST00000539504 CORO1CQ9ULV4 474 aaPredicted RBP11.95□□□□□ -0.5
SYNE1-237ENST00000539504 PKN2Q16513 984 aaKnown RBP11.95□□□□□ -0.5
SYNE1-237ENST00000539504 HHIPL2Q6UWX4 724 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 TAB3Q8N5C8 712 aaPredicted RBP11.95□□□□□ -0.5
SYNE1-237ENST00000539504 ANKLE1Q8NAG6 615 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 STK32AQ8WU08 396 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 ZBTB10Q96DT7 871 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 GMCL1Q96IK5 515 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 C8orf37Q96NL8 207 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 C11orf70Q9BRQ4 267 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 KIFC3Q9BVG8 833 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 OSBPL8Q9BZF1 889 aa11.95□□□□□ -0.5
SYNE1-237ENST00000539504 ENTPD5O75356 428 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 ABL2P42684 1182 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 ECE1P42892 770 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 CTCFP49711 727 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-237ENST00000539504 CRY2Q49AN0 593 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 FYB2Q5VWT5 728 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 FBXL13Q8NEE6 735 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 TTC8Q8TAM2 541 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 SLCO2A1Q92959 643 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 HAUS1Q96CS2 278 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 NPHS2Q9NP85 383 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 KCNQ5Q9NR82 932 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 LGALS13Q9UHV8 139 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 ZFP69BQ9UJL9 534 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 NEU2Q9Y3R4 380 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 ATAD5Q96QE3 1844 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 LRRD1A4D1F6 860 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 SMIM24O75264 130 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 ZBTB16Q05516 673 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 CLEC16AQ2KHT3 1053 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 LRMDAQ9H2I8 198 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 UBN1Q9NPG3 1134 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 RAB20Q9NX57 234 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 CYP39A1Q9NYL5 469 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 ZNF219Q9P2Y4 722 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-237ENST00000539504 NHSQ6T4R5 1651 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 GOLGA8SH3BPF8 625 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 GOLGA8MH3BSY2 632 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 ZSCAN5DPP0CG00 497 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 RPA3P35244 121 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-237ENST00000539504 ACVR2BQ13705 512 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 ZNF568Q3ZCX4 644 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 TAF1BQ53T94 588 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-237ENST00000539504 PCNX4Q63HM2 1172 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 ZBED8Q8IZ13 594 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 SPDYE1Q8NFV5 336 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-237ENST00000539504 STARD13Q9Y3M8 1113 aa11.94□□□□□ -0.5
SYNE1-237ENST00000539504 PEX11AO75192 247 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 CCDC15Q0P6D6 951 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 TRAF1Q13077 416 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 ALCAMQ13740 583 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 LMBRD2Q68DH5 695 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-237ENST00000539504 TRABD2AQ86V40 505 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 GMCL1P1Q8NEA9 526 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-237ENST00000539504 POMGNT1Q8WZA1 660 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 BICD1Q96G01 975 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 PPP1R12CQ9BZL4 782 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 KIAA1586Q9HCI6 787 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 ALG13Q9NP73 1137 aaKnown RBP11.93□□□□□ -0.5
SYNE1-237ENST00000539504 ARFGEF1Q9Y6D6 1849 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 EME2A4GXA9 379 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-237ENST00000539504 WFS1O76024 890 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 ASMTLO95671 621 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms