RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 TUBGCP4Q9UGJ1 667 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 UBQLN1Q9UMX0 589 aaKnown RBP21.58■■□□□ 1.05
CPSF1-209ENST00000532725 SSX2IPQ9Y2D8 614 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 DERAQ9Y315 318 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.58■■□□□ 1.05
CPSF1-209ENST00000532725 SF3B1O75533 1304 aaKnown RBP eCLIP21.57■■□□□ 1.049e-7■■■■■ 57.4
CPSF1-209ENST00000532725 GOLGA8IPA6NC78 632 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 GOLGA8JA6NMD2 632 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 CNPP09543 421 aaKnown RBP21.57■■□□□ 1.04
CPSF1-209ENST00000532725 LRPAP1P30533 357 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 GLUD2P49448 558 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 ELAVL2Q12926 359 aaKnown RBP21.57■■□□□ 1.04
CPSF1-209ENST00000532725 PNOCQ13519 176 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 LEXMQ3ZCV2 418 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 FAM171A1Q5VUB5 890 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 SPATA1Q5VX52 437 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 CLEC17AQ6ZS10 378 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 EP400NLQ6ZTU2 488 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 GPD1LQ8N335 351 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 KLHL5Q96PQ7 755 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 RXFP1Q9HBX9 757 aa21.57■■□□□ 1.04
CPSF1-209ENST00000532725 FSD2A1L4K1 749 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 C2CD2LO14523 706 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 CLIC2O15247 247 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 TBX10O75333 385 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 IL18RAPO95256 599 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 URODP06132 367 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 NFICP08651 508 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 CA8P35219 290 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 WNT7BP56706 349 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 AAK1Q2M2I8 961 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 RTP2Q5QGT7 225 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 KIAA1841Q6NSI8 718 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.56■■□□□ 1.04
CPSF1-209ENST00000532725 CCDC47Q96A33 483 aaKnown RBP21.56■■□□□ 1.04
CPSF1-209ENST00000532725 FBXL18Q96ME1 805 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 HSPBP1Q9NZL4 362 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 CGNQ9P2M7 1197 aaKnown RBP21.56■■□□□ 1.04
CPSF1-209ENST00000532725 C2CD2Q9Y426 696 aa21.56■■□□□ 1.04
CPSF1-209ENST00000532725 H3BQ06 376 aaPredicted RBP21.55■■□□□ 1.04
CPSF1-209ENST00000532725 XPOTO43592 962 aaKnown RBP21.55■■□□□ 1.04
CPSF1-209ENST00000532725 BMP1P13497 986 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 FGFR3P22607 806 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 BRCC3P46736 316 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 GUCY2FP51841 1108 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 TMEM132DQ14C87 1099 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 BRSK2Q8IWQ3 736 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 C12orf56Q8IXR9 622 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 SPATA20Q8TB22 786 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 SLC22A17Q8WUG5 538 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 RIN2Q8WYP3 895 aaPredicted RBP21.55■■□□□ 1.04
CPSF1-209ENST00000532725 MSLNLQ96KJ4 702 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 TTPALQ9BTX7 342 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 EMILIN2Q9BXX0 1053 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 KCTD10Q9H3F6 313 aa21.55■■□□□ 1.04
CPSF1-209ENST00000532725 TEX28O15482 410 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 TRAPPC3O43617 180 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 PRPF40AO75400 957 aaKnown RBP21.54■■□□□ 1.04
CPSF1-209ENST00000532725 KCNQ1P51787 676 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 UBE2HP62256 183 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 HS2ST1Q7LGA3 356 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 CEP57Q86XR8 500 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 BEST2Q8NFU1 509 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 LNX1Q8TBB1 728 aaPredicted RBP21.54■■□□□ 1.04
CPSF1-209ENST00000532725 TMEM174Q8WUU8 243 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 KIAA1586Q9HCI6 787 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 RBAKQ9NYW8 714 aaPredicted RBP21.54■■□□□ 1.04
CPSF1-209ENST00000532725 PCDHA5Q9Y5H7 936 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 HCFC2Q9Y5Z7 792 aa21.54■■□□□ 1.04
CPSF1-209ENST00000532725 PDCD11Q14690 1871 aaKnown RBP21.54■■□□□ 1.04
CPSF1-209ENST00000532725 ZNF233A6NK53 670 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 I3L4J1 428 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 PIRO00625 290 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 KLRC2P26717 231 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 NDUFV1P49821 464 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 LLGL2Q6P1M3 1020 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 PRSS55Q6UWB4 352 aaPredicted RBP21.53■■□□□ 1.04
CPSF1-209ENST00000532725 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.53■■□□□ 1.04
CPSF1-209ENST00000532725 PPFIBP1Q86W92 1011 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 NT5DC4Q86YG4 428 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 CBWD2Q8IUF1 395 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 EFCAB13Q8IY85 973 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 GOLGA5Q8TBA6 731 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 PIK3R5Q8WYR1 880 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 ERCC4Q92889 916 aaPredicted RBP21.53■■□□□ 1.04
CPSF1-209ENST00000532725 GSDMAQ96QA5 445 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.53■■□□□ 1.04
CPSF1-209ENST00000532725 DMAC2Q9NW81 257 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 FNIP2Q9P278 1114 aa21.53■■□□□ 1.04
CPSF1-209ENST00000532725 BARX2Q9UMQ3 279 aaPredicted RBP21.53■■□□□ 1.04
CPSF1-209ENST00000532725 ANO9A1A5B4 782 aa21.52■■□□□ 1.04
CPSF1-209ENST00000532725 PDXKO00764 312 aa21.52■■□□□ 1.04
CPSF1-209ENST00000532725 CLCN4P51793 760 aa21.52■■□□□ 1.04
CPSF1-209ENST00000532725 TJAP1Q5JTD0 557 aa21.52■■□□□ 1.04
CPSF1-209ENST00000532725 C9orf57Q5W0N0 161 aa21.52■■□□□ 1.04
CPSF1-209ENST00000532725 XXYLT1Q8NBI6 393 aa21.52■■□□□ 1.04
CPSF1-209ENST00000532725 NOC3LQ8WTT2 800 aaKnown RBP21.52■■□□□ 1.04
CPSF1-209ENST00000532725 SUSD3Q96L08 255 aa21.52■■□□□ 1.04
CPSF1-209ENST00000532725 PDE11AQ9HCR9 933 aa21.52■■□□□ 1.04
CPSF1-209ENST00000532725 DPP3Q9NY33 737 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms