RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TOPAZ1Q8N9V7 1692 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 SBNO1A3KN83 1393 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 NRXN3Q9Y4C0 1643 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 CDC42BPGQ6DT37 1551 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 GYPEP15421 78 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 MEF2AQ02078 507 aaPredicted RBP5.25□□□□□ -1.57
CD44-235ENST00000532339 TAF7LQ5H9L4 462 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 BROXQ5VW32 411 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 DOK3Q7L591 496 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 PTF1AQ7RTS3 328 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 RASSF3Q86WH2 238 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 MSL3Q8N5Y2 521 aaKnown RBP5.25□□□□□ -1.57
CD44-235ENST00000532339 OR52N2Q8NGI0 321 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 OR14C36Q8NHC7 312 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 CPT1CQ8TCG5 803 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 GPATCH3Q96I76 525 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 TTPALQ9BTX7 342 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 ANO3Q9BYT9 981 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 TMPRSS11EQ9UL52 423 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 FZD1Q9UP38 647 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 MAPRE3Q9UPY8 281 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 CLCA2Q9UQC9 943 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 DMRT1Q9Y5R6 373 aa5.25□□□□□ -1.57
CD44-235ENST00000532339 CICQ96RK0 1608 aaPredicted RBP5.25□□□□□ -1.57
CD44-235ENST00000532339 HFM1A2PYH4 1435 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 BCL9O00512 1426 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 ERBINQ96RT1 1412 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 PEAK1Q9H792 1746 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 A0A087X0B3 334 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 PPM1GO15355 546 aaPredicted RBP5.24□□□□□ -1.57
CD44-235ENST00000532339 PDE8AO60658 829 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 CFBP00751 764 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 ITGB1P05556 798 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 LTA4HP09960 611 aaKnown RBP5.24□□□□□ -1.57
CD44-235ENST00000532339 UBE3CQ15386 1083 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 ATP13A4Q4VNC1 1196 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 LY6G5CQ5SRR4 150 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 IQSEC1Q6DN90 963 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 LAIR1Q6GTX8 287 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 CCDC62Q6P9F0 684 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 Q6ZPA2 131 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 RHOUQ7L0Q8 258 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 RPUSD2Q8IZ73 545 aaKnown RBP5.24□□□□□ -1.57
CD44-235ENST00000532339 TCP11L2Q8N4U5 519 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 USP7Q93009 1102 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 PRDM11Q9NQV5 511 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 EVLQ9UI08 416 aaPredicted RBP5.24□□□□□ -1.57
CD44-235ENST00000532339 EIF2B4Q9UI10 523 aaKnown RBP5.24□□□□□ -1.57
CD44-235ENST00000532339 THRAP3Q9Y2W1 955 aaKnown RBP5.24□□□□□ -1.57
CD44-235ENST00000532339 PLEKHG2Q9H7P9 1386 aa5.24□□□□□ -1.57
CD44-235ENST00000532339 PAPPAQ13219 1627 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 SCAF4O95104 1147 aaKnown RBP5.23□□□□□ -1.57
CD44-235ENST00000532339 CLEC2LP0C7M8 214 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 MYCLP1P12525 358 aaPredicted RBP5.23□□□□□ -1.57
CD44-235ENST00000532339 KRT4P19013 534 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 FXR1P51114 621 aaKnown RBP eCLIP5.23□□□□□ -1.57
CD44-235ENST00000532339 DHCR24Q15392 516 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 C19orf54Q5BKX5 351 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 KCNV1Q6PIU1 500 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 LRRC55Q6ZSA7 311 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 LYSMD2Q8IV50 215 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 SLC41A1Q8IVJ1 513 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 PROKR1Q8TCW9 393 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 PAWRQ96IZ0 340 aaKnown RBP5.23□□□□□ -1.57
CD44-235ENST00000532339 NDC1Q9BTX1 674 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 LSM14BQ9BX40 385 aaKnown RBP5.23□□□□□ -1.57
CD44-235ENST00000532339 CPEB1Q9BZB8 566 aaKnown RBP5.23□□□□□ -1.57
CD44-235ENST00000532339 KCNH6Q9H252 994 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 BRD4O60885 1362 aaPredicted RBP5.23□□□□□ -1.57
CD44-235ENST00000532339 CNTNAP1P78357 1384 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 ATP7BP35670 1465 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 KIF1AQ12756 1690 aa5.23□□□□□ -1.57
CD44-235ENST00000532339 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.22□□□□□ -1.57
CD44-235ENST00000532339 PRR5-ARHGAP8B1AHC4 643 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 PRAMEF4O60810 478 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 CLSTN1O94985 981 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 ABHD16AO95870 558 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 BPIP17213 487 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 NR4A1P22736 598 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 APBA1Q02410 837 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 TRIM25Q14258 630 aaKnown RBP5.22□□□□□ -1.57
CD44-235ENST00000532339 PTPAQ15257 358 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 PITRM1Q5JRX3 1037 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 PCSK4Q6UW60 755 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 ANKRD13AQ8IZ07 590 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 DCLRE1CQ96SD1 692 aaKnown RBP5.22□□□□□ -1.57
CD44-235ENST00000532339 CDC5LQ99459 802 aaKnown RBP5.22□□□□□ -1.57
CD44-235ENST00000532339 AGAP2Q99490 1192 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 SLC46A2Q9BY10 475 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 KCTD10Q9H3F6 313 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 CDY2AQ9Y6F7 541 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 SBF2Q86WG5 1849 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 PHRF1Q9P1Y6 1649 aaKnown RBP5.22□□□□□ -1.57
CD44-235ENST00000532339 PNPLA7Q6ZV29 1317 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 IGSF1Q8N6C5 1336 aa5.22□□□□□ -1.57
CD44-235ENST00000532339 PARP4Q9UKK3 1724 aaKnown RBP5.21□□□□□ -1.58
CD44-235ENST00000532339 ULK1O75385 1050 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 LAG3P18627 525 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 EVA1CP58658 441 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 MAP2K1Q02750 393 aaPredicted RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms