RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PRRC2BQ5JSZ5 2229 aaKnown RBP15.68■□□□□ 0.1
CPSF1-206ENST00000531480 ANO9A1A5B4 782 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 CASTOR2A6NHX0 329 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 F8W810 466 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 FSCN2O14926 492 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 XPOTO43592 962 aaKnown RBP15.68■□□□□ 0.1
CPSF1-206ENST00000531480 KIF4AO95239 1232 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 OR1G1P47890 313 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 CASP4P49662 377 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 CLCNKBP51801 687 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 ADAM9Q13443 819 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 CT47A1Q5JQC4 288 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-206ENST00000531480 DCLRE1AQ6PJP8 1040 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 GPR65Q8IYL9 337 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 C3orf58Q8NDZ4 430 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 PLEKHO2Q8TD55 490 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 PARD3BQ8TEW8 1205 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 MRPL38Q96DV4 380 aaKnown RBP15.68■□□□□ 0.1
CPSF1-206ENST00000531480 BORCS6Q96GS4 357 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 TMEM169Q96HH4 297 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 DUSP9Q99956 384 aaKnown RBP15.68■□□□□ 0.1
CPSF1-206ENST00000531480 COLEC11Q9BWP8 271 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 GOLGA2P5Q9HBQ8 144 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 PDE11AQ9HCR9 933 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 ALG13Q9NP73 1137 aaKnown RBP15.68■□□□□ 0.1
CPSF1-206ENST00000531480 CACNG4Q9UBN1 327 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 ADAM28Q9UKQ2 775 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 MTCH2Q9Y6C9 303 aa15.68■□□□□ 0.1
CPSF1-206ENST00000531480 MYO7AQ13402 2215 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 TRIM49BA6NDI0 452 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 PIRO00625 290 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 AKAP3O75969 853 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 LETM1O95202 739 aaPredicted RBP15.67■□□□□ 0.1
CPSF1-206ENST00000531480 IGFBP6P24592 240 aaPredicted RBP15.67■□□□□ 0.1
CPSF1-206ENST00000531480 AARSP49588 968 aaKnown RBP eCLIP15.67■□□□□ 0.1
CPSF1-206ENST00000531480 NLRP12P59046 1061 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 FKBP3Q00688 224 aaKnown RBP15.67■□□□□ 0.1
CPSF1-206ENST00000531480 KRT17Q04695 432 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 SPAG1Q07617 926 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 PDE12Q6L8Q7 609 aaKnown RBP15.67■□□□□ 0.1
CPSF1-206ENST00000531480 WDR49Q8IV35 697 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 BEST2Q8NFU1 509 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 TMC2Q8TDI7 906 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 POF1BQ8WVV4 589 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 MED15Q96RN5 788 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 ZBP1Q9H171 429 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 CHST7Q9NS84 486 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 INTS13Q9NVM9 706 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 PRG3Q9Y2Y8 225 aaPredicted RBP15.67■□□□□ 0.1
CPSF1-206ENST00000531480 IRAK3Q9Y616 596 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 PTPRJQ12913 1337 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 EYSQ5T1H1 3165 aa15.67■□□□□ 0.1
CPSF1-206ENST00000531480 BICDL2A1A5D9 508 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 PODXLO00592 558 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 SLC16A3O15427 465 aaKnown RBP15.66■□□□□ 0.1
CPSF1-206ENST00000531480 SOD2P04179 222 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 PAX3P23760 479 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 PAK1Q13153 545 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 PTPROQ16827 1216 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 DPCR1Q3MIW9 517 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 C1orf127Q8N9H9 656 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 RDH13Q8NBN7 331 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 NELFBQ8WX92 580 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 FAM212AQ96EL1 285 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 CEP63Q96MT8 703 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 GAS2L1Q99501 681 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-206ENST00000531480 CGRRF1Q99675 332 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 TSG101Q99816 390 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 GPR62Q9BZJ7 368 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 TLR9Q9NR96 1032 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 PUF60Q9UHX1 559 aaKnown RBP15.66■□□□□ 0.1
CPSF1-206ENST00000531480 RWDD2AQ9UIY3 292 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 FRMD4BQ9Y2L6 1034 aa15.66■□□□□ 0.1
CPSF1-206ENST00000531480 IKBKBO14920 756 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 CETN3O15182 167 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 LILRB3O75022 631 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 B3GAT3O94766 335 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 CTSAP10619 480 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 ERCC5P28715 1186 aaPredicted RBP15.65■□□□□ 0.1
CPSF1-206ENST00000531480 PSMC2P35998 433 aaKnown RBP15.65■□□□□ 0.1
CPSF1-206ENST00000531480 ERVFC1P60507 584 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 ELAVL2Q12926 359 aaKnown RBP15.65■□□□□ 0.1
CPSF1-206ENST00000531480 C1orf220Q5T0J3 134 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 C9orf57Q5W0N0 161 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 FUT10Q6P4F1 479 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 INTS8Q75QN2 995 aaKnown RBP15.65■□□□□ 0.1
CPSF1-206ENST00000531480 TMEM130Q8N3G9 435 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 CACTINQ8WUQ7 758 aaKnown RBP15.65■□□□□ 0.1
CPSF1-206ENST00000531480 PPM1EQ8WY54 764 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 HERC2P3Q9BVR0 1158 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 NGRNQ9NPE2 291 aaKnown RBP15.65■□□□□ 0.1
CPSF1-206ENST00000531480 DPP3Q9NY33 737 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 SIX4Q9UIU6 781 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 ITGA11Q9UKX5 1188 aa15.65■□□□□ 0.1
CPSF1-206ENST00000531480 SF3B1O75533 1304 aaKnown RBP eCLIP15.65■□□□□ 0.19e-7■■■■■ 57.4
CPSF1-206ENST00000531480 TSC2P49815 1807 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 GUCY2FP51841 1108 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 AP3M2P53677 418 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 DSG1Q02413 1049 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 DUOXA2Q1HG44 320 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms