RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MAPK6Q16659 721 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 UVSSAQ2YD98 709 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 EDRF1Q3B7T1 1238 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 ANKRD40Q6AI12 368 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 TREML4Q6UXN2 200 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 ZPBP2Q6X784 338 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 RUFY4Q6ZNE9 571 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 FILIP1Q7Z7B0 1213 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 GAS2L3Q86XJ1 694 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 TREML1Q86YW5 311 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 MAP4K3Q8IVH8 894 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 C12orf56Q8IXR9 622 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 SMYD4Q8IYR2 804 aaPredicted RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 SYCP3Q8IZU3 236 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 GLIS3Q8NEA6 775 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 CAGE1Q8TC20 777 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 NOC3LQ8WTT2 800 aaKnown RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 NELFBQ8WX92 580 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 BADQ92934 168 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 TRIM43Q96BQ3 446 aaPredicted RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 ZBTB10Q96DT7 871 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 CEP63Q96MT8 703 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 MED15Q96RN5 788 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 CTAGE1Q96RT6 745 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 TSG101Q99816 390 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 FDXACB1Q9BRP7 624 aaPredicted RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 CCDC113Q9H0I3 377 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 GBP3Q9H0R5 595 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 SEMA6BQ9H3T3 888 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 TMEM39AQ9NV64 488 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 TYW1Q9NV66 732 aaKnown RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 PRMT7Q9NVM4 692 aaPredicted RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 ATXN7L1Q9ULK2 861 aaPredicted RBP8.09□□□□□ -1.11
CD44-228ENST00000528455 STYXL1Q9Y6J8 313 aa8.09□□□□□ -1.11
CD44-228ENST00000528455 LRRC10BA6NIK2 292 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 BECN2A8MW95 431 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 K7ENM7 598 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 M0QZ92 97 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 SOX1O00570 391 aaPredicted RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 KIAA0355O15063 1070 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 KIAA0391O15091 583 aaKnown RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 B4GALT4O60513 344 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 PARNO95453 639 aaKnown RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 GNA14O95837 355 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 LDHAP00338 332 aaKnown RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 CHRNA1P02708 482 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 DARSP14868 501 aaKnown RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 GARTP22102 1010 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 IDH3AP50213 366 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 MRPS6P82932 125 aaKnown RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 MYL5Q02045 173 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 FAAP100Q0VG06 881 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 ADAM9Q13443 819 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 BFSP2Q13515 415 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 TRIM71Q2Q1W2 868 aaKnown RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 ZCWPW2Q504Y3 356 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 KLHL10Q6JEL2 608 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 TTI2Q6NXR4 508 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 C11orf57Q6ZUT1 292 aaPredicted RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 HS2ST1Q7LGA3 356 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 FAM126BQ8IXS8 530 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 PPP1R13LQ8WUF5 828 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 NLRP4Q96MN2 994 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 ACO2Q99798 780 aaKnown RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 FGFBP2Q9BYJ0 223 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 FAM49AQ9H0Q0 323 aaPredicted RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 TRPV6Q9H1D0 765 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 CBX8Q9HC52 389 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 KIAA1586Q9HCI6 787 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 CHST12Q9NRB3 414 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 TRMT13Q9NUP7 481 aaKnown RBP8.08□□□□□ -1.12
CD44-228ENST00000528455 DMAC2Q9NW81 257 aa8.08□□□□□ -1.12
CD44-228ENST00000528455 ADGRA3Q8IWK6 1321 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 A0A1B0GUA9 196 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 GOLGA6L19H0YKK7 550 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 INO80B-WBP1J3KQ70 363 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 CETN3O15182 167 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 GPR182O15218 404 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 MAPK13O15264 365 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 TOM1L1O75674 476 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 IQCF3P0C7M6 154 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 CKBP12277 381 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 MPSTP25325 297 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 GRNP28799 593 aaKnown RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 THPOP40225 353 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 PMS1P54277 932 aaKnown RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 TPM4P67936 248 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 POU5F1Q01860 360 aaKnown RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 MBTD1Q05BQ5 628 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 MGAT3Q09327 533 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 SFSWAPQ12872 951 aaKnown RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 PRPF4BQ13523 1007 aaKnown RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 NCAPHQ15003 741 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 KYAT1Q16773 422 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 TPD52L1Q16890 204 aaPredicted RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 KIZQ2M2Z5 673 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 RNFT1Q5M7Z0 435 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 TSHZ1Q6ZSZ6 1077 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 DHX40Q8IX18 779 aaKnown RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 NELFCDQ8IXH7 590 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms