RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SYCE1Q8N0S2 351 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 NLRP7Q8WX94 980 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 PDCL3Q9H2J4 239 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 ZNF446Q9NWS9 450 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 COG5Q9UP83 839 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 PCDHB2Q9Y5E7 798 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 EVPLQ92817 2033 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 MGAMO43451 1857 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 NRCAMQ92823 1304 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 MBLAC1A4D2B0 266 aaPredicted RBP22.22■■□□□ 1.15
VPS28-209ENST00000528142 RHOXF2BP0C7M4 288 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 VEGFBP49765 207 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 GPC5P78333 572 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 POU5F1Q01860 360 aaKnown RBP22.22■■□□□ 1.15
VPS28-209ENST00000528142 NT5DC3Q86UY8 548 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 RHOT2Q8IXI1 618 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 PNKPQ96T60 521 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 RHOXF2Q9BQY4 288 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 RPF1Q9H9Y2 349 aaKnown RBP22.22■■□□□ 1.15
VPS28-209ENST00000528142 FAM170AA1A519 330 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 HAS3O00219 553 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 CES2O00748 559 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 MEFVO15553 781 aaPredicted RBP22.21■■□□□ 1.15
VPS28-209ENST00000528142 BUB1BO60566 1050 aaPredicted RBP22.21■■□□□ 1.15
VPS28-209ENST00000528142 TSPAN1O60635 241 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 IL18RAPO95256 599 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 CALCAP01258 141 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 BPIFB4P59827 614 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 MYL6P60660 151 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 UBR7Q8N806 425 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 SPATA4Q8NEY3 305 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 CPB2Q96IY4 423 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 ADAMTS10Q9H324 1103 aa22.21■■□□□ 1.15
VPS28-209ENST00000528142 RRP9O43818 475 aaKnown RBP22.2■■□□□ 1.14
VPS28-209ENST00000528142 TBC1D8O95759 1140 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 STAG3L1P0CL83 205 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 CXCL8P10145 99 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 TFAMQ00059 246 aaKnown RBP22.2■■□□□ 1.14
VPS28-209ENST00000528142 MFSD10Q14728 455 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 DAAM2Q86T65 1068 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 ZNF677Q86XU0 584 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 MMGT1Q8N4V1 131 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 MS4A14Q96JA4 679 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 IMPG2Q9BZV3 1241 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 SMARCAL1Q9NZC9 954 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 EHD2Q9NZN4 543 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 PAFAH1B1P43034 410 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 ADAM17P78536 824 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 C2orf54Q08AI8 447 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 CLEC16AQ2KHT3 1053 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 SGSM1Q2NKQ1 1148 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 ACAD10Q6JQN1 1059 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 PEX26Q7Z412 305 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 CALR3Q96L12 384 aaKnown RBP22.2■■□□□ 1.14
VPS28-209ENST00000528142 PCDHB4Q9Y5E5 795 aa22.2■■□□□ 1.14
VPS28-209ENST00000528142 A0A1B0GUA9 196 aa22.19■■□□□ 1.14
VPS28-209ENST00000528142 TMEM191BP0C7N4 346 aa22.19■■□□□ 1.14
VPS28-209ENST00000528142 CPT1AP50416 773 aa22.19■■□□□ 1.14
VPS28-209ENST00000528142 DNA2P51530 1060 aa22.19■■□□□ 1.14
VPS28-209ENST00000528142 HIC1Q14526 733 aa22.19■■□□□ 1.14
VPS28-209ENST00000528142 BRD3Q15059 726 aa22.19■■□□□ 1.14
VPS28-209ENST00000528142 CFAP221Q4G0U5 840 aa22.19■■□□□ 1.14
VPS28-209ENST00000528142 CCDC181Q5TID7 509 aa22.19■■□□□ 1.14
VPS28-209ENST00000528142 HES6Q96HZ4 224 aa22.19■■□□□ 1.14
VPS28-209ENST00000528142 XYLT2Q9H1B5 865 aa22.19■■□□□ 1.14
VPS28-209ENST00000528142 SMIM35A0A1B0GVV1 85 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 LACTBL1A8MY62 500 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 GPR32O75388 356 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 MTA2O94776 668 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 CYP1A2P05177 515 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 UNGP13051 313 aaPredicted RBP22.18■■□□□ 1.14
VPS28-209ENST00000528142 PSEN2P49810 448 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 KYAT1Q16773 422 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 TMEM270Q6UE05 265 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 PPP1R13LQ8WUF5 828 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 TAF4BQ92750 862 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 ANKRD36BP1Q96IX9 119 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 SCLT1Q96NL6 688 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 AP5M1Q9H0R1 490 aa22.18■■□□□ 1.14
VPS28-209ENST00000528142 CCDC151A5D8V7 595 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 ZRANB2O95218 330 aaKnown RBP eCLIP22.17■■□□□ 1.142e-7■■□□□ 13.6
VPS28-209ENST00000528142 ALDH1A1P00352 501 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 TNNC2P02585 160 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 TUBBP07437 444 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 ZNF132P52740 706 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 CDC42EP1Q00587 391 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 TRPC3Q13507 836 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 KIZQ2M2Z5 673 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 CC2D1AQ6P1N0 951 aaPredicted RBP22.17■■□□□ 1.14
VPS28-209ENST00000528142 RBBP8NLQ8NC74 664 aaPredicted RBP22.17■■□□□ 1.14
VPS28-209ENST00000528142 PBKQ96KB5 322 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 FAM49AQ9H0Q0 323 aaPredicted RBP22.17■■□□□ 1.14
VPS28-209ENST00000528142 CTTNBP2NLQ9P2B4 639 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 KCNK3O14649 394 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 ERLIN2O94905 339 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 CYP1A1P04798 512 aaPredicted RBP22.17■■□□□ 1.14
VPS28-209ENST00000528142 NFICP08651 508 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 BEX3Q00994 111 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 PTPROQ16827 1216 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 SLC10A6Q3KNW5 377 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms