RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PLCB4Q15147 1175 aa22.65■■□□□ 1.22
VPS28-205ENST00000526204 TDRD10Q5VZ19 366 aaKnown RBP22.65■■□□□ 1.22
VPS28-205ENST00000526204 MFSD5Q6N075 450 aa22.65■■□□□ 1.22
VPS28-205ENST00000526204 CCDC121Q6ZUS5 278 aa22.65■■□□□ 1.22
VPS28-205ENST00000526204 MDM1Q8TC05 714 aa22.65■■□□□ 1.22
VPS28-205ENST00000526204 A1CFQ9NQ94 594 aaKnown RBP22.65■■□□□ 1.22
VPS28-205ENST00000526204 GAS8O95995 478 aa22.64■■□□□ 1.22
VPS28-205ENST00000526204 NAMPTP43490 491 aa22.64■■□□□ 1.22
VPS28-205ENST00000526204 HMGCS2P54868 508 aa22.64■■□□□ 1.22
VPS28-205ENST00000526204 DALRD3Q5D0E6 543 aaKnown RBP22.64■■□□□ 1.22
VPS28-205ENST00000526204 TNFAIP8L3Q5GJ75 292 aa22.64■■□□□ 1.22
VPS28-205ENST00000526204 MON1BQ7L1V2 547 aa22.64■■□□□ 1.22
VPS28-205ENST00000526204 TAOK1Q7L7X3 1001 aa22.64■■□□□ 1.22
VPS28-205ENST00000526204 SAMD7Q7Z3H4 446 aa22.64■■□□□ 1.22
VPS28-205ENST00000526204 WRNIP1Q96S55 665 aa22.64■■□□□ 1.22
VPS28-205ENST00000526204 MRPL47Q9HD33 250 aaKnown RBP22.64■■□□□ 1.22
VPS28-205ENST00000526204 ASIC3Q9UHC3 531 aa22.64■■□□□ 1.22
VPS28-205ENST00000526204 PROSCO94903 275 aa22.64■■□□□ 1.21
VPS28-205ENST00000526204 CHN1P15882 459 aa22.64■■□□□ 1.21
VPS28-205ENST00000526204 DRD4P21917 467 aa22.64■■□□□ 1.21
VPS28-205ENST00000526204 PTK6Q13882 451 aa22.64■■□□□ 1.21
VPS28-205ENST00000526204 QPCTQ16769 361 aa22.64■■□□□ 1.21
VPS28-205ENST00000526204 ZNF568Q3ZCX4 644 aa22.64■■□□□ 1.21
VPS28-205ENST00000526204 P3H4Q92791 437 aa22.64■■□□□ 1.21
VPS28-205ENST00000526204 ZKSCAN4Q969J2 545 aaPredicted RBP22.64■■□□□ 1.21
VPS28-205ENST00000526204 DDX27Q96GQ7 796 aaKnown RBP22.64■■□□□ 1.21
VPS28-205ENST00000526204 SNF8Q96H20 258 aa22.64■■□□□ 1.21
VPS28-205ENST00000526204 SELENOSQ9BQE4 189 aa22.64■■□□□ 1.21
VPS28-205ENST00000526204 PORCNQ9H237 461 aa22.64■■□□□ 1.21
VPS28-205ENST00000526204 H0YHG0 523 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 CALCAP01258 141 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 NLRP11P59045 1033 aaKnown RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 PPARDQ03181 441 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 CUL2Q13617 745 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 CNPY4Q8N129 248 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 DEPTORQ8TB45 409 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 ACTR5Q9H9F9 607 aaPredicted RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 TELO2Q9Y4R8 837 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 MAFBQ9Y5Q3 323 aaPredicted RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 SMIM23A6NLE4 172 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 K7ERI5 159 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 PSTPIP1O43586 416 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 ACO1P21399 889 aaKnown RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 TBXAS1P24557 533 aaPredicted RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 ACOT2P49753 483 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 GMPSP49915 693 aaPredicted RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 IFI35P80217 286 aaPredicted RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 ACTN3Q08043 901 aaPredicted RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 LMBRD2Q68DH5 695 aaPredicted RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 CATSPERGQ6ZRH7 1159 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 CCDC25Q86WR0 208 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 ABRAQ8N0Z2 381 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 ATL2Q8NHH9 583 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 KAT2BQ92831 832 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 TRIM7Q9C029 511 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 DCLK3Q9C098 648 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 ADAM7Q9H2U9 754 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 DHX33Q9H6R0 707 aaKnown RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 ZNF302Q9NR11 478 aa22.63■■□□□ 1.21
VPS28-205ENST00000526204 RBAKQ9NYW8 714 aaPredicted RBP22.63■■□□□ 1.21
VPS28-205ENST00000526204 ATG7O95352 703 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 OATP04181 439 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 SNX1Q13596 522 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 RHBDF2Q6PJF5 856 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 CRELD2Q6UXH1 353 aaPredicted RBP22.62■■□□□ 1.21
VPS28-205ENST00000526204 MMS22LQ6ZRQ5 1243 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 RHOT1Q8IXI2 618 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 EPS8L3Q8TE67 593 aaKnown RBP22.62■■□□□ 1.21
VPS28-205ENST00000526204 BBXQ8WY36 941 aaPredicted RBP22.62■■□□□ 1.21
VPS28-205ENST00000526204 CCDC134Q9H6E4 229 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 CHST7Q9NS84 486 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 INTS9Q9NV88 658 aaKnown RBP22.62■■□□□ 1.21
VPS28-205ENST00000526204 HOXC10Q9NYD6 342 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 SCINQ9Y6U3 715 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 PARP14Q460N5 1801 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 ARID2Q68CP9 1835 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 DOCK1Q14185 1865 aa22.62■■□□□ 1.21
VPS28-205ENST00000526204 VNN1O95497 513 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 ICAM3P32942 547 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 BAG6P46379 1132 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 AUHQ13825 339 aaKnown RBP22.61■■□□□ 1.21
VPS28-205ENST00000526204 STXBP2Q15833 593 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 ATXN2LQ8WWM7 1075 aaKnown RBP22.61■■□□□ 1.21
VPS28-205ENST00000526204 SLC7A3Q8WY07 619 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 TMEM143Q96AN5 459 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 ZNF317Q96PQ6 595 aaPredicted RBP22.61■■□□□ 1.21
VPS28-205ENST00000526204 CNTN6Q9UQ52 1028 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 PCDHB4Q9Y5E5 795 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 TP73O15350 636 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 PHF13Q86YI8 300 aaPredicted RBP22.61■■□□□ 1.21
VPS28-205ENST00000526204 DNERQ8NFT8 737 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 UHMK1Q8TAS1 419 aaKnown RBP22.61■■□□□ 1.21
VPS28-205ENST00000526204 SERPINB12Q96P63 405 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 CGRRF1Q99675 332 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 CDC42EP4Q9H3Q1 356 aaKnown RBP22.61■■□□□ 1.21
VPS28-205ENST00000526204 ADAM22Q9P0K1 906 aa22.61■■□□□ 1.21
VPS28-205ENST00000526204 LRRIQ4A6NIV6 560 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 ATP4AP20648 1035 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 GLRA2P23416 452 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms