RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.07□□□□□ -0.64
VPS28-204ENST00000526054 A0A1B0GUA9 196 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 N4BP1O75113 896 aaKnown RBP11.07□□□□□ -0.64
VPS28-204ENST00000526054 RFPL2O75678 378 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 ZNF202O95125 648 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 SPATA31D3P0C874 917 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 CLCN5P51795 746 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 FAM160A1Q05DH4 1040 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 ALCAMQ13740 583 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 HSP90AA2PQ14568 343 aaPredicted RBP11.07□□□□□ -0.64
VPS28-204ENST00000526054 USP41Q3LFD5 358 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 DCAF4L1Q3SXM0 396 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 ATF7IP2Q5U623 682 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 KRBA2Q6ZNG9 492 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 SPATA31D4Q6ZUB0 917 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 STXBP4Q6ZWJ1 553 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 UNC13DQ70J99 1090 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 PALB2Q86YC2 1186 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 GLYCTKQ8IVS8 523 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 SIX5Q8N196 739 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 GSTCDQ8NEC7 633 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 RIN2Q8WYP3 895 aaPredicted RBP11.07□□□□□ -0.64
VPS28-204ENST00000526054 RABGGTAQ92696 567 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 CCDC47Q96A33 483 aaKnown RBP11.07□□□□□ -0.64
VPS28-204ENST00000526054 HVCN1Q96D96 273 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 BICD1Q96G01 975 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 PAGE5Q96GU1 130 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 RHOBTB2Q9BYZ6 727 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 GPR62Q9BZJ7 368 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 BLZF1Q9H2G9 400 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 ST6GALNAC4Q9H4F1 302 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 PLEKHA4Q9H4M7 779 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 PDZD7Q9H5P4 517 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 MRPL44Q9H9J2 332 aaKnown RBP11.07□□□□□ -0.64
VPS28-204ENST00000526054 PIDD1Q9HB75 910 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 OLFML3Q9NRN5 406 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 CHST7Q9NS84 486 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 CACNG4Q9UBN1 327 aa11.07□□□□□ -0.64
VPS28-204ENST00000526054 CITO14578 2027 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 PVALEFA0A1B0GWK0 134 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 CASTOR2A6NHX0 329 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 TGM5O43548 720 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 NARSO43776 548 aaKnown RBP11.06□□□□□ -0.64
VPS28-204ENST00000526054 TADA2AO75478 443 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 GCNT3O95395 438 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 RPL17P18621 184 aaKnown RBP11.06□□□□□ -0.64
VPS28-204ENST00000526054 AOC1P19801 751 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 NMT1P30419 496 aaKnown RBP11.06□□□□□ -0.64
VPS28-204ENST00000526054 UBE2HP62256 183 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 TUSC3Q13454 348 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 ZPBP2Q6X784 338 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 CLEC17AQ6ZS10 378 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 GET4Q7L5D6 327 aaPredicted RBP11.06□□□□□ -0.64
VPS28-204ENST00000526054 TAS1R3Q7RTX0 852 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 GPR65Q8IYL9 337 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 GRAMD1CQ8IYS0 662 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 FMR1NBQ8N0W7 255 aaPredicted RBP11.06□□□□□ -0.64
VPS28-204ENST00000526054 HASPINQ8TF76 798 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 HDAC7Q8WUI4 952 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 ZNF707Q96C28 371 aaPredicted RBP11.06□□□□□ -0.64
VPS28-204ENST00000526054 FIZ1Q96SL8 496 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 ZDHHC7Q9NXF8 308 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 FNIP2Q9P278 1114 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 EPS15L1Q9UBC2 864 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 HOOK1Q9UJC3 728 aaKnown RBP11.06□□□□□ -0.64
VPS28-204ENST00000526054 TBX20Q9UMR3 447 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 EXOC7Q9UPT5 735 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 TNFSF13BQ9Y275 285 aa11.06□□□□□ -0.64
VPS28-204ENST00000526054 VWA8A3KMH1 1905 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 SPTBN4Q9H254 2564 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 PROB1E7EW31 1015 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 GOLGA6L22H0YM25 854 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 HNRNPDLO14979 420 aaKnown RBP11.05□□□□□ -0.64
VPS28-204ENST00000526054 KINO60870 393 aaKnown RBP11.05□□□□□ -0.64
VPS28-204ENST00000526054 KIF4AO95239 1232 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 C1RP00736 705 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 EDN1P05305 212 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 CFHP08603 1231 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 NPR3P17342 541 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 RFX1P22670 979 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 NBL1P41271 181 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 LIG4P49917 911 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 GTF2BQ00403 316 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 CUL4BQ13620 913 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 ZNF568Q3ZCX4 644 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 RTP2Q5QGT7 225 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 FAM26FQ5R3K3 315 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 NT5DC1Q5TFE4 455 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 EEF1DP3Q658K8 133 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 PRSS55Q6UWB4 352 aaPredicted RBP11.05□□□□□ -0.64
VPS28-204ENST00000526054 MPZL3Q6UWV2 235 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 ZNF720Q7Z2F6 126 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 MAP4K3Q8IVH8 894 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 RSAD2Q8WXG1 361 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 TIGD1Q96MW7 591 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 MYADMQ96S97 322 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 ACO2Q99798 780 aaKnown RBP11.05□□□□□ -0.64
VPS28-204ENST00000526054 PAAF1Q9BRP4 392 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 TCHPQ9BT92 498 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 TARS2Q9BW92 718 aaKnown RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms