RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 CCDC195A0A1B0GUA6 201 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 FAM189A1O60320 539 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 TKTP29401 623 aaKnown RBP22.76■■□□□ 1.23
VPS28-203ENST00000524521 AMPD3Q01432 767 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 ENOX2Q16206 610 aaKnown RBP22.76■■□□□ 1.23
VPS28-203ENST00000524521 LILRA6Q6PI73 481 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 HDAC7Q8WUI4 952 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 ACCSQ96QU6 501 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 STRA6Q9BX79 667 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 PLEKHA4Q9H4M7 779 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 OLFML3Q9NRN5 406 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 KBTBD4Q9NVX7 518 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 FAM13BQ9NYF5 915 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 TUBGCP4Q9UGJ1 667 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 CPSF3Q9UKF6 684 aaKnown RBP22.76■■□□□ 1.23
VPS28-203ENST00000524521 EXOC7Q9UPT5 735 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 ZDHHC9Q9Y397 364 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 NR2E1Q9Y466 385 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 PLXNA3P51805 1871 aa22.76■■□□□ 1.23
VPS28-203ENST00000524521 FRMD3A2A2Y4 597 aa22.75■■□□□ 1.23
VPS28-203ENST00000524521 POLR2DO15514 142 aaKnown RBP22.75■■□□□ 1.23
VPS28-203ENST00000524521 PPP1R37O75864 691 aa22.75■■□□□ 1.23
VPS28-203ENST00000524521 C1RP00736 705 aa22.75■■□□□ 1.23
VPS28-203ENST00000524521 ACOT2P49753 483 aa22.75■■□□□ 1.23
VPS28-203ENST00000524521 KCNA1Q09470 495 aa22.75■■□□□ 1.23
VPS28-203ENST00000524521 L1TD1Q5T7N2 865 aaKnown RBP22.75■■□□□ 1.23
VPS28-203ENST00000524521 KREMEN2Q8NCW0 462 aa22.75■■□□□ 1.23
VPS28-203ENST00000524521 AGO2Q9UKV8 859 aaKnown RBP22.75■■□□□ 1.23
VPS28-203ENST00000524521 STYXL1Q9Y6J8 313 aa22.75■■□□□ 1.23
VPS28-203ENST00000524521 FAM86C2PA6NEL3 165 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 ADAM12O43184 909 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 RFPL2O75678 378 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 OR1D2P34982 312 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 CASP5P51878 434 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 POSTNQ15063 836 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 ZBTB6Q15916 424 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 TMEM31Q5JXX7 168 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 RESP18Q5W5W9 173 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 C15orf39Q6ZRI6 1047 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 SYCP3Q8IZU3 236 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 TMEM130Q8N3G9 435 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 CMASQ8NFW8 434 aaPredicted RBP22.74■■□□□ 1.23
VPS28-203ENST00000524521 POMGNT1Q8WZA1 660 aa22.74■■□□□ 1.23
VPS28-203ENST00000524521 UBQLN1Q9UMX0 589 aaKnown RBP22.74■■□□□ 1.23
VPS28-203ENST00000524521 C5orf42Q9H799 3197 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 VWA8A3KMH1 1905 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 XPOTO43592 962 aaKnown RBP22.73■■□□□ 1.23
VPS28-203ENST00000524521 ADRB2P07550 413 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 MCM4P33991 863 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 BECN1Q14457 450 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 ANKS3Q6ZW76 656 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 CD302Q8IX05 232 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 CHAMP1Q96JM3 812 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 FGFBP2Q9BYJ0 223 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 TRIM9Q9C026 710 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 MTRRQ9UBK8 725 aa22.73■■□□□ 1.23
VPS28-203ENST00000524521 C2CD4DB7Z1M9 353 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 GPR37L1O60883 481 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 CYP3A5P20815 502 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 ADSSP30520 456 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 ASIC1P78348 528 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 KRT85P78386 507 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 ALCAMQ13740 583 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 JADE1Q6IE81 842 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 SMG7Q92540 1137 aaKnown RBP22.72■■□□□ 1.23
VPS28-203ENST00000524521 TSPAN18Q96SJ8 248 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 LRFN3Q9BTN0 628 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 PIDD1Q9HB75 910 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 C11orf16Q9NQ32 467 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 CDY1Q9Y6F8 540 aa22.72■■□□□ 1.23
VPS28-203ENST00000524521 PDCD11Q14690 1871 aaKnown RBP22.72■■□□□ 1.23
VPS28-203ENST00000524521 MTCL1Q9Y4B5 1905 aaKnown RBP22.71■■□□□ 1.23
VPS28-203ENST00000524521 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.71■■□□□ 1.23
VPS28-203ENST00000524521 TULP1O00294 542 aaPredicted RBP22.71■■□□□ 1.23
VPS28-203ENST00000524521 PRPF6O94906 941 aaKnown RBP22.71■■□□□ 1.23
VPS28-203ENST00000524521 LRPAP1P30533 357 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 GUCY2FP51841 1108 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 RAB33AQ14088 237 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 VARS2Q5ST30 1063 aaKnown RBP22.71■■□□□ 1.23
VPS28-203ENST00000524521 RSPO2Q6UXX9 243 aaPredicted RBP22.71■■□□□ 1.23
VPS28-203ENST00000524521 CYP26C1Q6V0L0 522 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 HPS3Q969F9 1004 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 SUSD3Q96L08 255 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 SPATA32Q96LK8 384 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 C7orf25Q9BPX7 421 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 FBXW11Q9UKB1 542 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 KCNH3Q9ULD8 1083 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.71■■□□□ 1.23
VPS28-203ENST00000524521 BACE2Q9Y5Z0 518 aa22.71■■□□□ 1.23
VPS28-203ENST00000524521 SYN3O14994 580 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 ZMYND10O75800 440 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 AFMP43652 599 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 SPATA1Q5VX52 437 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 CCDC149Q6ZUS6 474 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 STXBP4Q6ZWJ1 553 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 TDRD5Q8NAT2 981 aaKnown RBP22.7■■□□□ 1.22
VPS28-203ENST00000524521 BEST2Q8NFU1 509 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 LEO1Q8WVC0 666 aaPredicted RBP22.7■■□□□ 1.22
VPS28-203ENST00000524521 ZNF707Q96C28 371 aaPredicted RBP22.7■■□□□ 1.22
VPS28-203ENST00000524521 PRKD2Q9BZL6 878 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms