RNA–Protein interactions for RNA: ENST00000523483.5

SDCBP-212, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 3,589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-212ENST00000523483 LRRC8AQ8IWT6 810 aa10.07□□□□□ -0.8
SDCBP-212ENST00000523483 C17orf53Q8N3J3 647 aaPredicted RBP10.07□□□□□ -0.8
SDCBP-212ENST00000523483 HELQQ8TDG4 1101 aa10.07□□□□□ -0.8
SDCBP-212ENST00000523483 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.07□□□□□ -0.8
SDCBP-212ENST00000523483 NUP58Q9BVL2 599 aa10.07□□□□□ -0.8
SDCBP-212ENST00000523483 CHST12Q9NRB3 414 aa10.07□□□□□ -0.8
SDCBP-212ENST00000523483 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.07□□□□□ -0.84e-6■□□□□ 10.9
SDCBP-212ENST00000523483 MEFVO15553 781 aaPredicted RBP10.06□□□□□ -0.8
SDCBP-212ENST00000523483 GFPT2O94808 682 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 C1orf127Q8N9H9 656 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 TC2NQ8N9U0 490 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 SNX27Q96L92 541 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 TOX2Q96NM4 488 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 BAG1Q99933 345 aaPredicted RBP10.06□□□□□ -0.8
SDCBP-212ENST00000523483 ASB7Q9H672 318 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 ACP6Q9NPH0 428 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 AJAP1Q9UKB5 411 aaPredicted RBP10.06□□□□□ -0.8
SDCBP-212ENST00000523483 FRMPD3Q5JV73 1810 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 TRIM43BA6NCK2 446 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 ARL5CA6NH57 179 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 PPEF2O14830 753 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 CAND2O75155 1236 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 CSPG5O95196 566 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 C4BPAP04003 597 aaKnown RBP10.06□□□□□ -0.8
SDCBP-212ENST00000523483 WEE2P0C1S8 567 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 DRAP1Q14919 205 aaPredicted RBP10.06□□□□□ -0.8
SDCBP-212ENST00000523483 KYAT1Q16773 422 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 GLB1LQ6UWU2 654 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 AGMOQ6ZNB7 445 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 SLC24A5Q71RS6 500 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 BEST2Q8NFU1 509 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 OR8K1Q8NGG5 319 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 TRIM43Q96BQ3 446 aaPredicted RBP10.06□□□□□ -0.8
SDCBP-212ENST00000523483 ABHD10Q9NUJ1 306 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 TBX21Q9UL17 535 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 A0A0U1RQF3 1178 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 NOL4O94818 638 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 VNN1O95497 513 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 CALCAP01258 141 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 SSTR3P32745 418 aaPredicted RBP10.06□□□□□ -0.8
SDCBP-212ENST00000523483 GATMP50440 423 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 ORC1Q13415 861 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 TRIM14Q14142 442 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 RTN4RL1Q86UN2 441 aaPredicted RBP10.06□□□□□ -0.8
SDCBP-212ENST00000523483 CCDC51Q96ER9 411 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 SEZ6LQ9BYH1 1024 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 PCDHB7Q9Y5E2 793 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 SNX9Q9Y5X1 595 aa10.06□□□□□ -0.8
SDCBP-212ENST00000523483 SOWAHDA6NJG2 315 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 EVI5O60447 810 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 THP07101 528 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 RAP1GAPP47736 663 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 FAM26DQ5JW98 314 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 KCNN1Q92952 543 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 PGBD4Q96DM1 585 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 CHP1Q99653 195 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 DESI2Q9BSY9 194 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 TRMT1Q9NXH9 659 aaKnown RBP10.05□□□□□ -0.8
SDCBP-212ENST00000523483 CEP72Q9P209 647 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 POLIQ9UNA4 740 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 PRG3Q9Y2Y8 225 aaPredicted RBP10.05□□□□□ -0.8
SDCBP-212ENST00000523483 NUB1Q9Y5A7 615 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 ITIH6Q6UXX5 1313 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 PLEKP08567 350 aaPredicted RBP10.05□□□□□ -0.8
SDCBP-212ENST00000523483 CDH8P55286 799 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 ZBED6P86452 979 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 MTF1Q14872 753 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 EPC2Q52LR7 807 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 ZNF667Q5HYK9 610 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 SFMBT2Q5VUG0 894 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 TAF3Q5VWG9 929 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 E4F1Q66K89 784 aaPredicted RBP10.05□□□□□ -0.8
SDCBP-212ENST00000523483 ECHDC2Q86YB7 292 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 LINC01599Q8WXQ3 324 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 HPDLQ96IR7 371 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 PDCL3Q9H2J4 239 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 KCNF1Q9H3M0 494 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 MIOSQ9NXC5 875 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 CAPN11Q9UMQ6 739 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 RAB27AP51159 221 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 SOX4Q06945 474 aaPredicted RBP10.05□□□□□ -0.8
SDCBP-212ENST00000523483 GPNMBQ14956 572 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 PLEKHG4Q58EX7 1191 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.05□□□□□ -0.8
SDCBP-212ENST00000523483 FAM193BQ96PV7 902 aaPredicted RBP10.05□□□□□ -0.8
SDCBP-212ENST00000523483 FTHL17Q9BXU8 183 aa10.05□□□□□ -0.8
SDCBP-212ENST00000523483 UBQLN1Q9UMX0 589 aaKnown RBP10.05□□□□□ -0.8
SDCBP-212ENST00000523483 GTPBP10A4D1E9 387 aaKnown RBP10.04□□□□□ -0.8
SDCBP-212ENST00000523483 I3L4J1 428 aa10.04□□□□□ -0.8
SDCBP-212ENST00000523483 FOXN3O00409 490 aaPredicted RBP10.04□□□□□ -0.8
SDCBP-212ENST00000523483 ATF7P17544 494 aaPredicted RBP10.04□□□□□ -0.8
SDCBP-212ENST00000523483 MSNP26038 577 aaKnown RBP10.04□□□□□ -0.8
SDCBP-212ENST00000523483 GTF2H1P32780 548 aa10.04□□□□□ -0.8
SDCBP-212ENST00000523483 PBX3P40426 434 aa10.04□□□□□ -0.8
SDCBP-212ENST00000523483 TNNC1P63316 161 aa10.04□□□□□ -0.8
SDCBP-212ENST00000523483 KLHL30Q0D2K2 578 aa10.04□□□□□ -0.8
SDCBP-212ENST00000523483 TBX2Q13207 712 aaPredicted RBP10.04□□□□□ -0.8
SDCBP-212ENST00000523483 IKBKEQ14164 716 aa10.04□□□□□ -0.8
SDCBP-212ENST00000523483 ASIC2Q16515 512 aa10.04□□□□□ -0.8
SDCBP-212ENST00000523483 TCTN1Q2MV58 587 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms