RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 BEST2Q8NFU1 509 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 YME1L1Q96TA2 773 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 MRPL9Q9BYD2 267 aaKnown RBP17.58■□□□□ 0.41
LSM1-204ENST00000522515 TMEM8AQ9HCN3 771 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 SLC38A7Q9NVC3 462 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 DPP3Q9NY33 737 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 CACNG4Q9UBN1 327 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 RANBP2P49792 3224 aaKnown RBP17.58■□□□□ 0.4
LSM1-204ENST00000522515 PES1O00541 588 aaKnown RBP17.57■□□□□ 0.4
LSM1-204ENST00000522515 TNNC2P02585 160 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 CYP3A5P20815 502 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 GTF2H1P32780 548 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 AP3M2P53677 418 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 FANCCQ00597 558 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 RNASELQ05823 741 aaKnown RBP17.57■□□□□ 0.4
LSM1-204ENST00000522515 ZACNQ401N2 412 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 KRT39Q6A163 491 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 LRRC43Q8N309 656 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 RSPH1Q8WYR4 309 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 CASTOR2A6NHX0 329 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 GRXCR1A8MXD5 290 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 XPOTO43592 962 aaKnown RBP17.57■□□□□ 0.4
LSM1-204ENST00000522515 SERPINC1P01008 464 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 ITGB3P05106 788 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 MXI1P50539 228 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 DSC1Q08554 894 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 TUSC3Q13454 348 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 BIRC3Q13489 604 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 BTG3Q14201 252 aaPredicted RBP17.57■□□□□ 0.4
LSM1-204ENST00000522515 CMTR2Q8IYT2 770 aaKnown RBP17.57■□□□□ 0.4
LSM1-204ENST00000522515 CXorf38Q8TB03 319 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 NAP1L5Q96NT1 182 aaPredicted RBP17.57■□□□□ 0.4
LSM1-204ENST00000522515 RAD9AQ99638 391 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 PAAF1Q9BRP4 392 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 NRDE2Q9H7Z3 1164 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 DNAJB4Q9UDY4 337 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 SIX4Q9UIU6 781 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 INSL6Q9Y581 213 aa17.57■□□□□ 0.4
LSM1-204ENST00000522515 TLL1O43897 1013 aa17.56■□□□□ 0.4
LSM1-204ENST00000522515 VNN1O95497 513 aa17.56■□□□□ 0.4
LSM1-204ENST00000522515 CST3P01034 146 aaPredicted RBP17.56■□□□□ 0.4
LSM1-204ENST00000522515 TPM2P07951 284 aa17.56■□□□□ 0.4
LSM1-204ENST00000522515 RABGGTBP53611 331 aa17.56■□□□□ 0.4
LSM1-204ENST00000522515 CHRDL2Q6WN34 429 aa17.56■□□□□ 0.4
LSM1-204ENST00000522515 COLGALT2Q8IYK4 626 aa17.56■□□□□ 0.4
LSM1-204ENST00000522515 TAS1R2Q8TE23 839 aa17.56■□□□□ 0.4
LSM1-204ENST00000522515 RABGGTAQ92696 567 aa17.56■□□□□ 0.4
LSM1-204ENST00000522515 FAM193BQ96PV7 902 aaPredicted RBP17.56■□□□□ 0.4
LSM1-204ENST00000522515 PRO3102Q9H379 93 aa17.56■□□□□ 0.4
LSM1-204ENST00000522515 PPEF2O14830 753 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 AP5Z1O43299 807 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 PHACTR2O75167 634 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 LRRN2O75325 713 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 KRT19P08727 400 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 IGFBP6P24592 240 aaPredicted RBP17.55■□□□□ 0.4
LSM1-204ENST00000522515 LRPAP1P30533 357 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 POLR2BP30876 1174 aaKnown RBP17.55■□□□□ 0.4
LSM1-204ENST00000522515 CLCNKBP51801 687 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 PLCB2Q00722 1185 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 MYL7Q01449 175 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 UVSSAQ2YD98 709 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 TDHQ8IZJ6 230 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 CWH43Q9H720 699 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 RTN4Q9NQC3 1192 aaKnown RBP17.55■□□□□ 0.4
LSM1-204ENST00000522515 IFNKQ9P0W0 207 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 ITGA11Q9UKX5 1188 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 AGAP1Q9UPQ3 857 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 COQ4Q9Y3A0 265 aa17.55■□□□□ 0.4
LSM1-204ENST00000522515 MRPL42Q9Y6G3 142 aaKnown RBP17.55■□□□□ 0.4
LSM1-204ENST00000522515 LAMA2P24043 3122 aaKnown RBP17.55■□□□□ 0.4
LSM1-204ENST00000522515 A0A1B0GTH6 734 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 ANO9A1A5B4 782 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 LCHNA4D1U4 455 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 LGALS16A8MUM7 142 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 PMM2O15305 246 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 TEX33O43247 280 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 N4BP1O75113 896 aaKnown RBP17.54■□□□□ 0.4
LSM1-204ENST00000522515 ZC3H11AO75152 810 aaKnown RBP eCLIP17.54■□□□□ 0.4
LSM1-204ENST00000522515 HLA-DRAP01903 254 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 UBASH3AP57075 661 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 C9orf57Q5W0N0 161 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 FBXL13Q8NEE6 735 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 SP7Q8TDD2 431 aaPredicted RBP17.54■□□□□ 0.4
LSM1-204ENST00000522515 SEMA4DQ92854 862 aa17.54■□□□□ 0.4
LSM1-204ENST00000522515 FSD2A1L4K1 749 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 PIRO00625 290 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 P4HA2O15460 535 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 MYOGP15173 224 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 RPL9P32969 192 aaKnown RBP17.53■□□□□ 0.4
LSM1-204ENST00000522515 PBX3P40426 434 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 PIK3CAP42336 1068 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 OR1G1P47890 313 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 RBP5P82980 135 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 NCOA4Q13772 614 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 UPP1Q16831 310 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 FILIP1LQ4L180 1135 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 EPC2Q52LR7 807 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 FIBCD1Q8N539 461 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 ELMO3Q96BJ8 720 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 CRACR2AQ9BSW2 395 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms