RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 FAM167AQ96KS9 214 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 TMEM8AQ9HCN3 771 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 FAM49BQ9NUQ9 324 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 NEU2Q9Y3R4 380 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 CALCAP01258 141 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 KRT7P08729 469 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 MYBL2P10244 700 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 PDGFRAP16234 1089 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 RRM1P23921 792 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 EIF3EP60228 445 aaKnown RBP12.37□□□□□ -0.43
SYNPO-204ENST00000519664 PPP1R2P3Q6NXS1 205 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 SLC51AQ86UW1 340 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 MYLK4Q86YV6 388 aaPredicted RBP12.37□□□□□ -0.43
SYNPO-204ENST00000519664 AFAP1L2Q8N4X5 818 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 EPS8L3Q8TE67 593 aaKnown RBP12.37□□□□□ -0.43
SYNPO-204ENST00000519664 SEC16BQ96JE7 1060 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 FAM193BQ96PV7 902 aaPredicted RBP12.37□□□□□ -0.43
SYNPO-204ENST00000519664 TRABDQ9H4I3 376 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 MARCOQ9UEW3 520 aaPredicted RBP12.37□□□□□ -0.43
SYNPO-204ENST00000519664 SPDYE16A6NNV3 312 aaPredicted RBP12.37□□□□□ -0.43
SYNPO-204ENST00000519664 SESN2P58004 480 aaPredicted RBP12.37□□□□□ -0.43
SYNPO-204ENST00000519664 SPDYE2Q495Y8 402 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 GPAT2Q6NUI2 795 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 SLC13A5Q86YT5 568 aaPredicted RBP12.37□□□□□ -0.43
SYNPO-204ENST00000519664 CCDC33Q8N5R6 958 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 AGAP3Q96P47 875 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 MTMR9Q96QG7 549 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 SIK2Q9H0K1 926 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 SMYD3Q9H7B4 428 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 BATF3Q9NR55 127 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 STRIP2Q9ULQ0 834 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 CAMTA1Q9Y6Y1 1673 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 ADAMTS3O15072 1205 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 KDELC2Q7Z4H8 507 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 EXOC8Q8IYI6 725 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 TTC13Q8NBP0 860 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 UBA3Q8TBC4 463 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 KAT5Q92993 513 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 HDAC11Q96DB2 347 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 CALR3Q96L12 384 aaKnown RBP12.37□□□□□ -0.43
SYNPO-204ENST00000519664 CST8O60676 142 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 CAND2O75155 1236 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 EPHB1P54762 984 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 ACTR2P61160 394 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 MAPK7Q13164 816 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 ZNF507Q8TCN5 953 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 TATDN2Q93075 761 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 FAM84AQ96KN4 292 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 TRAIPQ9BWF2 469 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 NUF2Q9BZD4 464 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 RAB6BQ9NRW1 208 aa12.37□□□□□ -0.43
SYNPO-204ENST00000519664 NOP53Q9NZM5 478 aaKnown RBP12.37□□□□□ -0.43
SYNPO-204ENST00000519664 ARHGAP23Q9P227 1491 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 E2F8A0AVK6 867 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 LCP1P13796 627 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 CDK17Q00537 523 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 TTLL4Q14679 1199 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 PTGISQ16647 500 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 MEI1Q5TIA1 1274 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 CAPRIN2Q6IMN6 1127 aaKnown RBP12.36□□□□□ -0.43
SYNPO-204ENST00000519664 SV2AQ7L0J3 742 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 C1orf131Q8NDD1 294 aaKnown RBP12.36□□□□□ -0.43
SYNPO-204ENST00000519664 SEPT1Q8WYJ6 367 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 EXT2Q93063 718 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 MMTAG2Q9BU76 263 aaKnown RBP12.36□□□□□ -0.43
SYNPO-204ENST00000519664 ECT2Q9H8V3 914 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 RNF181Q9P0P0 153 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 RAB21Q9UL25 225 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 SPDYE2BA6NHP3 402 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 DDX3XO00571 662 aaKnown RBP eCLIP12.36□□□□□ -0.43
SYNPO-204ENST00000519664 CDH16O75309 829 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 SPDYE6P0CI01 402 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 COILP38432 576 aaPredicted RBP12.36□□□□□ -0.43
SYNPO-204ENST00000519664 HSPA9P38646 679 aaKnown RBP12.36□□□□□ -0.43
SYNPO-204ENST00000519664 CAV1Q03135 178 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 RNASELQ05823 741 aaKnown RBP12.36□□□□□ -0.43
SYNPO-204ENST00000519664 MAP7Q14244 749 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 MIIPQ5JXC2 388 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 PACS2Q86VP3 889 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 TSEN2Q8NCE0 465 aaKnown RBP12.36□□□□□ -0.43
SYNPO-204ENST00000519664 SENP7Q9BQF6 1050 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 SEMA4AQ9H3S1 761 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 KCND2Q9NZV8 630 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 ZFP69BQ9UJL9 534 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 CHMP2BQ9UQN3 213 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 SIK3Q9Y2K2 1263 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 TMX2Q9Y320 296 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 ICAM1P05362 532 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 CYP11B1P15538 503 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 MDH1BQ5I0G3 518 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 FAXCQ5TGI0 409 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 ARMCX2Q7L311 632 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 PARP9Q8IXQ6 854 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 GBP7Q8N8V2 638 aaPredicted RBP12.36□□□□□ -0.43
SYNPO-204ENST00000519664 ZSWIM1Q9BR11 485 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 CCDC68Q9H2F9 335 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 RICTORQ6R327 1708 aa12.36□□□□□ -0.43
SYNPO-204ENST00000519664 LPXNO60711 386 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 PDHA1P08559 390 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 AP1B1Q10567 949 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms